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Barley
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Barley
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • plasma membrane 3
  • golgi 1
  • peroxisome 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, peroxisome, plastid, secretory
BaCelLo:nucleus
ChloroP:plastid
iPSORT:secretory
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
HORVU1Hr1G070360.1
HORVU1Hr1G072070.1
HORVU1Hr1G082010.3
HORVU2Hr1G086930.1
HORVU3Hr1G030760.2
HORVU3Hr1G069970.2
HORVU3Hr1G086830.7
HORVU3Hr1G088130.1
HORVU4Hr1G024530.1
HORVU4Hr1G074140.2
HORVU5Hr1G047520.1
HORVU5Hr1G112790.2
HORVU7Hr1G002080.2
HORVU7Hr1G075700.2
HORVU7Hr1G081290.4

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 HORVU1Hr1G072070.1 AT3G46060.1 21798944
AT2G38360.1 HORVU3Hr1G086830.7 AT3G46060.1 21798944
AT2G38360.1 HORVU5Hr1G112790.2 AT3G46060.1 21798944
AT5G01640.1 HORVU7Hr1G002080.2 AT4G25660.1 21798944
AT5G01640.1 HORVU1Hr1G070360.1 AT5G01640.1 21798944
AT5G01640.1 HORVU2Hr1G086930.1 AT5G01640.1 21798944
AT5G01640.1 HORVU3Hr1G088130.1 AT5G01640.1 21798944
AT5G01640.1 HORVU4Hr1G024530.1 AT5G01640.1 21798944
AT5G01640.1 HORVU5Hr1G047520.1 AT5G01640.1 21798944
AT5G01640.1 HORVU4Hr1G074140.2 AT5G12390.1 21798944
AT5G01640.1 HORVU1Hr1G082010.3 AT5G41600.1 21798944
AT5G01640.1 HORVU3Hr1G030760.2 AT5G41600.1 21798944
AT5G01640.1 HORVU3Hr1G069970.2 AT5G41600.1 21798944
AT5G01640.1 HORVU7Hr1G075700.2 AT5G41600.1 21798944
AT5G01640.1 HORVU7Hr1G081290.4 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
TraesCS4D01G132000.1 Wheat plastid 97.79 97.36
TraesCS4A01G180500.1 Wheat plastid 97.79 96.93
TraesCS4B01G137300.1 Wheat plastid 96.9 96.48
Os11t0107600-01 Rice plastid 77.88 80.0
Os12t0107600-00 Rice plastid 76.11 78.18
OQU82692 Sorghum plastid 73.45 74.11
EES15518 Sorghum plastid 73.45 71.24
Zm00001d052322_P001 Maize plastid 57.96 69.31
HORVU5Hr1G047520.1 Barley endoplasmic reticulum, plastid 70.35 65.7
GSMUA_Achr3P10010_001 Banana plastid 59.73 62.5
KXG38626 Sorghum golgi, plasma membrane, plastid 49.12 60.0
GSMUA_Achr5P07440_001 Banana plastid 56.64 59.53
HORVU1Hr1G070360.1 Barley plastid 55.75 56.76
HORVU3Hr1G088130.1 Barley plastid 53.98 55.45
KRH76033 Soybean endoplasmic reticulum 52.21 53.88
CDY07736 Canola plastid 51.77 52.7
CDY63156 Canola plastid 50.44 52.29
AT2G38360.1 Thale cress plastid 50.88 52.27
Bra000056.1-P Field mustard plastid 51.33 52.25
KRH65569 Soybean plastid 52.21 51.98
CDX80758 Canola plastid 48.23 50.93
Solyc10g076360.1.1 Tomato plastid 49.56 50.0
AT5G01640.1 Thale cress plastid 48.67 49.33
PGSC0003DMT400034320 Potato plastid 46.02 49.06
KRG93818 Soybean extracellular, plasma membrane, vacuole 18.14 48.81
PGSC0003DMT400041063 Potato plastid 49.12 48.68
AT4G00005.1 Thale cress extracellular, plasma membrane 24.78 47.46
Bra005112.1-P Field mustard plastid 34.96 47.02
KRH00333 Soybean plastid 46.46 46.26
CDY61529 Canola plastid 25.66 46.03
KRH49465 Soybean plastid 45.13 45.74
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 35.4 43.96
HORVU2Hr1G086930.1 Barley cytosol, plastid 21.68 43.75
KRH32827 Soybean plastid 41.59 41.59
HORVU1Hr1G028520.1 Barley plastid 28.32 29.63
HORVU5Hr1G106520.1 Barley cytosol 27.43 26.5
HORVU3Hr1G018940.2 Barley plastid 28.32 25.1
HORVU0Hr1G013770.1 Barley mitochondrion 33.19 23.36
Protein Annotations
EMBL:AK371756EnsemblPlants:HORVU4Hr1G024530.1EnsemblPlantsGene:HORVU4Hr1G024530GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF35PFAM:PF03208SEG:segTMHMM:TMhelix
UniParc:UPI0002007DE8UniProt:F2E6I2MapMan:22.8.4.3.2:::
Description
PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:F2E6I2]
Coordinates
chrchr4H:+:140480071..140492231
Molecular Weight (calculated)
23096.0 Da
IEP (calculated)
8.219
GRAVY (calculated)
0.625
Length
226 amino acids
Sequence
(BLAST)
001: MASAAPPLLP TSVPAAAPAT VLPAAPDAAT SIASPDPAAT RAFLGRLYDS AKRSLSGARP WPELLDRAAL SRPDSLSDAT ARLRKNLAYF RVNYAALVAL
101: SLAVSLLAHP FSLAALLALL AAWCFLYILR PADAAPLAAF GRTFSDRETL GGLIAASVFV VFLTSVGGII FSALALGAAV VCAHGAFRVP EDLFLDEVPD
201: QGLVGNGATL NLLSFINGAA GGGGRV
Best Arabidopsis Sequence Match ( AT5G01640.1 )
(BLAST)
001: MVSTNPPVLP ISTTATDTTN QPPIVTAVVE SQPPVVRAFV NGVTETVCGG LSRSRPWSEL LDRSAFTKPD SLSEAGTRFR KNSSYFRVNY VCIVALILGF
101: SLLAHPFSLI LLLCLAASWL FLYLFRPSDR PLILFGRSFS EYETLGGLIL STIAVIFFTS VGSVLISALM IGIATICVHG AFRAPDDLFL DEQDHAASGF
201: LSFIGVPAIP SVAPSASSAA SPV
Arabidopsis Description
PRA1B5PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178UH31]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.