Factsheet for HORVU5Hr1G112790.2

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

mitochondrion 1
cytosol 2
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
HORVU1Hr1G028520.1
HORVU3Hr1G018940.2
HORVU3Hr1G038200.3
HORVU3Hr1G082800.3	peroxisome
HORVU7Hr1G002080.2

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	HORVU3Hr1G082800.3	AT1G29260.1	23297417
AT3G46060.1	HORVU3Hr1G038200.3	AT3G06540.1	21798944
AT3G46060.1	HORVU1Hr1G028520.1	AT3G13720.1	21798944
AT3G46060.1	HORVU3Hr1G018940.2	AT3G13720.1	21798944
AT3G46060.1	HORVU7Hr1G002080.2	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5B01G489300.1	Wheat	golgi	75.68	91.59
TraesCS5A01G476400.1	Wheat	cytosol	75.68	91.59
TraesCS5D01G489700.1	Wheat	cytosol	75.29	91.12
Os03t0819900-01	Rice	plasma membrane	71.04	85.98
EER93195	Sorghum	cytosol	70.66	85.51
Zm00001d034638_P001	Maize	cytosol	70.66	85.12
Solyc06g005350.2.1	Tomato	cytosol	46.33	83.33
CDY72056	Canola	cytosol	40.15	83.2
PGSC0003DMT400049296	Potato	cytosol	69.11	82.87
Solyc09g010370.2.1	Tomato	extracellular, plastid	68.73	82.41
PGSC0003DMT400022823	Potato	cytosol	68.73	82.41
KRH70501	Soybean	endoplasmic reticulum	68.73	82.41
KRH01606	Soybean	endoplasmic reticulum	68.73	82.41
GSMUA_Achr9P03220_001	Banana	cytosol	68.73	82.41
KRH29838	Soybean	endoplasmic reticulum	67.95	82.24
PGSC0003DMT400040138	Potato	cytosol	68.34	81.94
VIT_13s0019g00520.t01	Wine grape	extracellular	68.34	81.94
VIT_08s0040g02490.t01	Wine grape	cytosol	68.34	81.94
GSMUA_Achr10P...	Banana	cytosol	68.34	81.94
CDY30926	Canola	cytosol	68.34	81.94
GSMUA_Achr6P34270_001	Banana	cytosol	68.34	81.94
GSMUA_Achr11P...	Banana	cytosol	68.34	81.94
KRH24835	Soybean	cytosol	67.57	81.78
GSMUA_AchrUn_...	Banana	cytosol	67.95	81.48
KRH36193	Soybean	endoplasmic reticulum, extracellular	67.95	81.48
PGSC0003DMT400008917	Potato	cytosol	67.95	81.48
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	67.95	81.48
CDX77855	Canola	cytosol	67.95	81.48
CDX86045	Canola	cytosol	67.95	81.48
Bra019475.1-P	Field mustard	cytosol	67.95	81.48
CDY71506	Canola	cytosol	67.57	81.02
CDX68365	Canola	cytosol	67.57	81.02
PGSC0003DMT400071317	Potato	cytosol	67.57	81.02
KRG90563	Soybean	cytosol	67.57	81.02
Solyc10g086350.1.1	Tomato	cytosol, nucleus	67.57	81.02
AT5G59840.1	Thale cress	cytosol	67.57	81.02
AT3G46060.1	Thale cress	cytosol	67.57	81.02
VIT_06s0004g04200.t01	Wine grape	cytosol	67.18	80.56
Solyc04g011360.2.1	Tomato	plastid	67.18	80.56
KRH23030	Soybean	endoplasmic reticulum	66.8	80.47
Bra002527.1-P	Field mustard	cytosol	66.8	80.09
Bra006690.1-P	Field mustard	cytosol	66.8	80.09
CDY31592	Canola	cytosol	66.8	80.09
GSMUA_Achr8P02620_001	Banana	cytosol	66.8	80.09
KRH10292	Soybean	cytosol	66.41	80.0
CDX88725	Canola	cytosol	66.41	79.63
CDX88726	Canola	cytosol	66.41	79.63
GSMUA_Achr10P...	Banana	cytosol	66.41	79.63
AT3G53610.3	Thale cress	cytosol	66.02	79.17
CDX80224	Canola	cytosol	64.09	77.93
Bra033830.1-P	Field mustard	cytosol	57.92	77.72
Bra020282.1-P	Field mustard	cytosol	64.48	77.31
CDY09249	Canola	cytosol	64.09	76.85
HORVU1Hr1G072070.1	Barley	cytosol	63.71	73.33
CDY34032	Canola	cytosol	41.31	72.79
CDY70243	Canola	cytosol	41.31	70.39
CDY07577	Canola	cytosol	68.34	66.29
CDX94925	Canola	cytosol	41.7	65.85
Bra003149.1-P	Field mustard	cytosol	67.57	65.06
CDY52746	Canola	cytosol	67.57	65.06
HORVU3Hr1G086830.7	Barley	cytosol	62.93	61.51
CDX99131	Canola	cytosol	69.11	58.12
HORVU3Hr1G048090.1	Barley	plasma membrane	44.02	56.16
HORVU3Hr1G010800.8	Barley	cytosol	34.75	55.21
Bra038265.1-P	Field mustard	cytosol	69.11	47.61
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	40.15	46.22
HORVU3Hr1G010780.1	Barley	plasma membrane	44.4	41.22
HORVU6Hr1G051470.1	Barley	cytosol	32.05	39.52
HORVU5Hr1G071600.3	Barley	cytosol	27.03	32.56

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	UniProt:A0A287SRP9	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:HORVU5Hr1G112790	EnsemblPlants:HORVU5Hr1G112790.2
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF646
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	TMHMM:TMhelix	UniParc:UPI000B4702A7	SEG:seg

Description

No Description!

Coordinates

chrchr5H:+:640332761..640334660

Molecular Weight (calculated)

29173.7 Da

IEP (calculated)

6.900

GRAVY (calculated)

-0.024

Length

259 amino acids

Sequence
(BLAST)

001: MHSFTHNFFD FVSRESFMAY LIISLLWLIF FEYSQLIYFW IPALRFCGVG CSFVWCSISN HSQILFTYVG VGKSCLLLRF SDGSFTTSFI TTIGIDFKIR
101: TVELDGKRIK LQIWDTAGQE RFRTITTAYY RGAMGILLVY DVTDESSFNN IRNWIKNIEQ HASDNVSKIL VGNKADMDES KRAVPTSKGQ ALADEYGIQF
201: FETSAKTNMN VEQVFFSIAR DIKQRLSEAD SKPEGGTIKI NTEGDASAAA GQKSACCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.