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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 4
  • mitochondrion 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:nucleus
Predotar:secretory
PProwler:mitochondrion
WoLF PSORT:cytosol
YLoc:cytosol
 endoplasmic reticulum: 27224218
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRH05675
KRH08874
KRH10001
KRH11018 peroxisome
KRH21268 peroxisome
KRH22653
KRH23330
KRH26664
KRH28917
KRH35244
KRH38387
KRH44167
KRH47141
KRH76543

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G46060.1 KRH11018 AT1G29260.1 23297417
AT3G46060.1 KRH21268 AT1G29260.1 23297417
AT3G46060.1 KRH05675 AT3G06540.1 21798944
AT3G46060.1 KRH28917 AT3G06540.1 21798944
AT3G46060.1 KRH76543 AT3G06540.1 21798944
AT3G46060.1 KRH10001 AT3G13720.1 21798944
AT3G46060.1 KRH23330 AT3G13720.1 21798944
AT3G46060.1 KRH44167 AT3G13720.1 21798944
AT3G46060.1 KRH47141 AT3G13720.1 21798944
AT3G46060.1 KRH08874 AT4G25660.1 21798944
AT3G46060.1 KRH35244 AT4G25660.1 21798944
AT3G46060.1 KRH38387 AT4G25660.1 21798944
AT3G46060.1 KRH22653 AT5G22290.1 21798944
AT3G46060.1 KRH26664 AT5G22290.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH10292 Soybean cytosol 97.67 97.67
CDY72056 Canola cytosol 55.81 96.0
KRH29838 Soybean endoplasmic reticulum 93.95 94.39
KRH24835 Soybean cytosol 93.49 93.93
Solyc06g005350.2.1 Tomato cytosol 62.79 93.75
KRH70501 Soybean endoplasmic reticulum 93.95 93.52
KRH01606 Soybean endoplasmic reticulum 93.95 93.52
AT5G59840.1 Thale cress cytosol 93.02 92.59
CDY30926 Canola cytosol 93.02 92.59
VIT_06s0004g04200.t01 Wine grape cytosol 93.02 92.59
AT3G46060.1 Thale cress cytosol 92.56 92.13
KRH36193 Soybean endoplasmic reticulum, extracellular 92.56 92.13
PGSC0003DMT400040138 Potato cytosol 92.56 92.13
Bra019475.1-P Field mustard cytosol 92.56 92.13
CDY31592 Canola cytosol 91.63 91.2
Bra002527.1-P Field mustard cytosol 91.63 91.2
KRG90563 Soybean cytosol 91.63 91.2
Bra006690.1-P Field mustard cytosol 91.63 91.2
CDY71506 Canola cytosol 91.63 91.2
CDX77855 Canola cytosol 91.63 91.2
CDX68365 Canola cytosol 91.63 91.2
CDX86045 Canola cytosol 91.63 91.2
Solyc11g073050.1.1 Tomato endoplasmic reticulum 91.63 91.2
CDX88726 Canola cytosol 91.16 90.74
CDX88725 Canola cytosol 91.16 90.74
Os07t0239400-01 Rice plasma membrane 90.7 90.7
EER93195 Sorghum cytosol 90.23 90.65
GSMUA_AchrUn_... Banana cytosol 90.7 90.28
Os05t0461300-01 Rice plastid 90.7 90.28
PGSC0003DMT400008917 Potato cytosol 90.7 90.28
Zm00001d010538_P005 Maize cytosol 90.23 90.23
Zm00001d038380_P001 Maize extracellular, plasma membrane 90.23 90.23
EES19652 Sorghum cytosol 90.23 90.23
Os03t0819900-01 Rice plasma membrane 89.77 90.19
GSMUA_Achr9P03220_001 Banana cytosol 90.23 89.81
GSMUA_Achr6P34270_001 Banana cytosol 90.23 89.81
GSMUA_Achr11P... Banana cytosol 90.23 89.81
GSMUA_Achr10P... Banana cytosol 90.23 89.81
Zm00001d034638_P001 Maize cytosol 89.77 89.77
GSMUA_Achr10P... Banana cytosol 89.77 89.35
Bra033830.1-P Field mustard cytosol 80.0 89.12
TraesCS1D01G285200.1 Wheat cytosol 88.37 88.78
TraesCS1B01G295600.1 Wheat cytosol 88.37 88.78
TraesCS1A01G286200.1 Wheat cytosol 88.37 88.78
CDX80224 Canola cytosol 87.91 88.73
TraesCS3B01G388900.1 Wheat cytosol 88.37 87.96
TraesCS3A01G356000.3 Wheat plastid 88.37 87.96
Bra020282.1-P Field mustard cytosol 87.91 87.5
GSMUA_Achr8P02620_001 Banana cytosol 87.91 87.5
TraesCS5B01G489300.1 Wheat golgi 86.98 87.38
CDY09249 Canola cytosol 87.44 87.04
TraesCS5A01G476400.1 Wheat cytosol 86.51 86.92
TraesCS5D01G489700.1 Wheat cytosol 86.05 86.45
OQU88745 Sorghum cytosol 88.84 84.51
HORVU1Hr1G072070.1 Barley cytosol 85.58 81.78
TraesCS3D01G350000.3 Wheat cytosol 88.37 79.83
CDY34032 Canola cytosol 53.49 78.23
CDY70243 Canola cytosol 53.02 75.0
CDX94925 Canola cytosol 53.49 70.12
HORVU5Hr1G112790.2 Barley cytosol, extracellular 80.47 66.8
CDX99131 Canola cytosol 92.09 64.29
KRH01059 Soybean endoplasmic reticulum 60.0 63.86
KRH40178 Soybean endoplasmic reticulum 59.53 63.37
KRH04201 Soybean cytosol, extracellular 58.6 62.38
KRH57496 Soybean endoplasmic reticulum 58.6 62.38
KRH66494 Soybean endoplasmic reticulum 58.6 62.07
HORVU3Hr1G086830.7 Barley cytosol 76.28 61.89
KRH06045 Soybean cytosol 53.02 56.72
KRH26285 Soybean endoplasmic reticulum 53.02 56.72
KRH48822 Soybean cytosol, endoplasmic reticulum 38.6 52.53
Bra038265.1-P Field mustard cytosol 91.63 52.39
KRH11646 Soybean endoplasmic reticulum 42.79 43.6
KRH36659 Soybean cytosol 42.79 43.6
KRG93957 Soybean endoplasmic reticulum 41.86 42.65
KRH58242 Soybean endoplasmic reticulum 41.86 42.65
Protein Annotations
EntrezGene:100780673MapMan:22.8.1.5Gene3D:3.40.50.300EMBL:ACUP02008452EnsemblPlantsGene:GLYMA_13G333500GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0006810
GO:GO:0006904GO:GO:0008150GO:GO:0009306GO:GO:0009987GO:GO:0016787GO:GO:0017157
UniProt:I1M4T8EnsemblPlants:KRH23030ProteinID:KRH23030ProteinID:KRH23030.1ProteinID:KRH23031.1InterPro:P-loop_NTPase
PFAM:PF00071PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF826SMART:SM00173
SMART:SM00174SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_dom
InterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI000233ADF6SEG:seg::
Description
hypothetical protein
Coordinates
chr13:-:42756166..42759962
Molecular Weight (calculated)
23840.3 Da
IEP (calculated)
7.343
GRAVY (calculated)
-0.297
Length
215 amino acids
Sequence
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIEQD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKVLVGNKA DMDESKRVVP TSKGQALADE YGIKFFETSA KTNLNVEEVF FSIARDIKQR LADTDSKAEP AGIKINNQLD
201: HATAGEVAQK SACCG
Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)
001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT
Arabidopsis Description
RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.