CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 1
cytosol 4
endoplasmic reticulum 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH66494	Soybean	endoplasmic reticulum	91.77	71.43
HORVU3Hr1G010800.8	Barley	cytosol	68.99	66.87
TraesCS3A01G056800.1	Wheat	cytosol	79.11	66.14
KRH40178	Soybean	endoplasmic reticulum	82.91	64.85
KRH01059	Soybean	endoplasmic reticulum	82.91	64.85
AT1G02130.1	Thale cress	cytosol	81.65	63.55
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	80.38	62.56
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	80.38	62.56
TraesCS3A01G056600.1	Wheat	cytosol	79.75	62.07
TraesCS3D01G056600.1	Wheat	plastid	79.75	62.07
GSMUA_Achr11P...	Banana	cytosol	79.75	62.07
TraesCS3B01G070300.2	Wheat	cytosol	79.75	62.07
KRH57496	Soybean	endoplasmic reticulum	78.48	61.39
GSMUA_Achr8P15030_001	Banana	cytosol	78.48	61.08
Os02t0653800-01	Rice	plasma membrane	78.48	61.08
Os01t0179700-01	Rice	plasma membrane	78.48	61.08
KRH04201	Soybean	cytosol, extracellular	77.85	60.89
GSMUA_Achr2P18340_001	Banana	plasma membrane	77.22	60.4
TraesCS3D01G056500.1	Wheat	golgi	77.22	60.1
EES07529	Sorghum	cytosol	77.22	60.1
Solyc01g090170.2.1	Tomato	unclear	75.95	59.11
TraesCS3A01G056500.1	Wheat	cytosol	75.95	59.11
Bra024956.1-P	Field mustard	cytosol	75.32	58.91
TraesCS3A01G056900.1	Wheat	mitochondrion	62.03	58.68
Bra022113.1-P	Field mustard	cytosol	74.68	58.42
Bra017497.1-P	Field mustard	cytosol	74.68	58.42
Bra012658.1-P	Field mustard	cytosol	73.42	57.43
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	79.11	55.07
CDY38055	Canola	cytosol	80.38	53.59
KRH06045	Soybean	cytosol	67.09	52.74
KRH26285	Soybean	endoplasmic reticulum	66.46	52.24
Zm00001d051336_P001	Maize	plastid	76.58	44.49
GSMUA_Achr7P06570_001	Banana	cytosol	76.58	44.0
HORVU3Hr1G010780.1	Barley	plasma membrane	77.22	43.73
VIT_15s0021g01410.t01	Wine grape	cytosol	56.33	43.41
Bra040162.1-P	Field mustard	cytosol	74.68	43.07
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	79.75	41.86
TraesCS3A01G056700.1	Wheat	cytosol	65.19	40.39
KRH23030	Soybean	endoplasmic reticulum	52.53	38.6
KRH10292	Soybean	cytosol	52.53	38.6
KRH36193	Soybean	endoplasmic reticulum, extracellular	52.53	38.43
KRG90563	Soybean	cytosol	52.53	38.43
KRH29838	Soybean	endoplasmic reticulum	51.9	38.32
KRH01606	Soybean	endoplasmic reticulum	51.9	37.96
KRH70501	Soybean	endoplasmic reticulum	51.9	37.96
KRH24835	Soybean	cytosol	51.27	37.85
Zm00001d017456_P003	Maize	cytosol	77.22	30.42
KRH11646	Soybean	endoplasmic reticulum	40.51	30.33
KRH36659	Soybean	cytosol	40.51	30.33
KRG93957	Soybean	endoplasmic reticulum	39.87	29.86
KRH58242	Soybean	endoplasmic reticulum	39.87	29.86

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	EMBL:ACUP02004289	EnsemblPlantsGene:GLYMA_07G114800	GO:GO:0000139	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789	GO:GO:0005794
GO:GO:0006810	GO:GO:0006888	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787	UniProt:K7L170
EnsemblPlants:KRH48822	ProteinID:KRH48822	ProteinID:KRH48822.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002954B05	:

Description

hypothetical protein

Coordinates

chr7:-:12182755..12186662

Molecular Weight (calculated)

17621.5 Da

IEP (calculated)

4.520

GRAVY (calculated)

-0.428

Length

158 amino acids

Sequence
(BLAST)

001: MLQDDSYIES YISTIGVDFW DTAGQERFRT ITSSYYREAH GIIIVYDVID EDRFNNVKQW LSEIDRYASD NVNKLLVGNK SDMTTNRVVS YDTAKEFADQ
101: IGIPFMETSA KDATNVEDAF MAMSTAIKNS QPSANNAKPP IVHIKGQPVG PKSGCCSS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.