CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 3
cytosol 3
endoplasmic reticulum 3
golgi 3
extracellular 2
vacuole 2
plasma membrane 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH01059	Soybean	endoplasmic reticulum	98.51	98.51
AT1G02130.1	Thale cress	cytosol	94.06	93.6
KRH66494	Soybean	endoplasmic reticulum	93.07	92.61
GSMUA_Achr2P18340_001	Banana	plasma membrane	91.09	91.09
Os01t0179700-01	Rice	plasma membrane	91.09	90.64
Os02t0653800-01	Rice	plasma membrane	91.09	90.64
TraesCS3D01G056500.1	Wheat	golgi	91.09	90.64
KRH57496	Soybean	endoplasmic reticulum	90.59	90.59
KRH04201	Soybean	cytosol, extracellular	90.1	90.1
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	90.1	89.66
EES07529	Sorghum	cytosol	90.1	89.66
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	90.1	89.66
TraesCS3A01G056500.1	Wheat	cytosol	90.1	89.66
TraesCS3B01G070300.2	Wheat	cytosol	89.6	89.16
TraesCS3A01G056600.1	Wheat	cytosol	89.6	89.16
GSMUA_Achr8P15030_001	Banana	cytosol	89.6	89.16
TraesCS3D01G056600.1	Wheat	plastid	89.6	89.16
GSMUA_Achr11P...	Banana	cytosol	89.11	88.67
HORVU3Hr1G010800.8	Barley	cytosol	69.8	86.5
Solyc01g090170.2.1	Tomato	unclear	85.64	85.22
Bra017497.1-P	Field mustard	cytosol	85.15	85.15
Bra022113.1-P	Field mustard	cytosol	85.15	85.15
Bra024956.1-P	Field mustard	cytosol	85.15	85.15
Bra012658.1-P	Field mustard	cytosol	84.16	84.16
KRH48822	Soybean	cytosol, endoplasmic reticulum	64.85	82.91
TraesCS3A01G056800.1	Wheat	cytosol	76.73	82.01
CDY38055	Canola	cytosol	94.06	80.17
GSMUA_Achr1P04400_001	Banana	endoplasmic reticulum, extracellular, plasma membrane	89.6	79.74
KRH06045	Soybean	cytosol	75.74	76.12
KRH26285	Soybean	endoplasmic reticulum	74.26	74.63
TraesCS3A01G056900.1	Wheat	mitochondrion	56.93	68.86
HORVU3Hr1G010780.1	Barley	plasma membrane	91.09	65.95
Zm00001d051336_P001	Maize	plastid	87.62	65.07
GSMUA_Achr7P06570_001	Banana	cytosol	87.62	64.36
Bra040162.1-P	Field mustard	cytosol	83.17	61.31
VIT_15s0021g01410.t01	Wine grape	cytosol	61.39	60.49
TraesCS3A01G056700.1	Wheat	cytosol	76.24	60.39
GSMUA_Achr11P...	Banana	endoplasmic reticulum, plastid	89.6	60.13
KRH23030	Soybean	endoplasmic reticulum	63.37	59.53
KRH10292	Soybean	cytosol	63.37	59.53
KRH29838	Soybean	endoplasmic reticulum	62.87	59.35
KRH36193	Soybean	endoplasmic reticulum, extracellular	63.37	59.26
KRH24835	Soybean	cytosol	62.38	58.88
KRH01606	Soybean	endoplasmic reticulum	62.87	58.8
KRG90563	Soybean	cytosol	62.87	58.8
KRH70501	Soybean	endoplasmic reticulum	62.87	58.8
KRH11646	Soybean	endoplasmic reticulum	48.51	46.45
KRH36659	Soybean	cytosol	48.51	46.45
KRH58242	Soybean	endoplasmic reticulum	47.03	45.02
KRG93957	Soybean	endoplasmic reticulum	47.03	45.02
Zm00001d017456_P003	Maize	cytosol	88.12	44.39

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EntrezGene:547803	EMBL:ACUP02006026	EnsemblPlantsGene:GLYMA_09G243300	GO:GO:0000139
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005783	GO:GO:0005789
GO:GO:0005794	GO:GO:0006810	GO:GO:0006888	GO:GO:0008150	GO:GO:0016020	GO:GO:0016787
EnsemblPlants:KRH40178	ProteinID:KRH40178	ProteinID:KRH40178.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF666	UniProt:Q39845	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	EMBL:U58854	UniParc:UPI00000A2D47	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:46593103..46596803

Molecular Weight (calculated)

22425.5 Da

IEP (calculated)

4.882

GRAVY (calculated)

-0.310

Length

202 amino acids

Sequence
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYIESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKCDLEANRA VSYETAKAFA DGIGIPFMET SAKDATNVEQ AFMAMTASIK DRMASQPANN ARPPTVQIRG QPVAQKGGCC
201: SS

Best Arabidopsis Sequence Match ( AT1G02130.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFSD DSYVESYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TDEESFNNVK
101: QWLSEIDRYA SDNVNKLLVG NKSDLTENRA IPYETAKAFA DEIGIPFMET SAKDATNVEQ AFMAMSASIK ERMASQPAGN NARPPTVQIR GQPVAQKNGC
201: CST

Arabidopsis Description

RABD2ARas-related protein RABD2a [Source:UniProtKB/Swiss-Prot;Acc:P28188]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.