Skip to main content
crop-pal logo
Soybean
Search for another protein from :
Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: endoplasmic reticulum

Predictor Summary:
  • nucleus 2
  • cytosol 3
  • mitochondrion 1
  • endoplasmic reticulum 3
  • golgi 3
  • extracellular 2
  • vacuole 2
  • plasma membrane 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:endoplasmic reticulum
Any Predictor:cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:nucleus
EpiLoc:cytosol
MultiLoc:cytosol
Plant-mPloc:endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:secretory
TargetP:secretory
WoLF PSORT:plastid
YLoc:cytosol
 endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913
msms PMID: 28499913 doi
S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata
Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.
msms PMID: 27224218 doi
X Wang, S Komatsu
Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG98294
KRH10001
KRH14895
KRH23330
KRH30354
KRH44167
KRH47141
KRH54835
KRH66004
KRH73238
KRH75801

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G11730.1 KRH14895 AT2G40380.1 21798944
AT3G11730.1 KRH54835 AT2G40380.1 21798944
AT3G11730.1 KRH73238 AT2G40380.1 21798944
AT3G11730.1 KRH10001 AT3G13710.1 21798944
AT3G11730.1 KRH23330 AT3G13710.1 21798944
AT3G11730.1 KRH44167 AT3G13710.1 21798944
AT3G11730.1 KRH47141 AT3G13710.1 21798944
AT3G11730.1 KRH66004 AT3G54120.1 21798944
AT3G11730.1 KRH75801 AT3G54120.1 21798944
AT3G11730.1 KRG98294 AT5G58750.1 21798944
AT3G11730.1 KRH30354 AT5G58750.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH06045 Soybean cytosol 98.01 98.01
VIT_12s0035g01150.t01 Wine grape vacuole 90.05 89.6
PGSC0003DMT400064019 Potato cytosol, extracellular 87.56 87.13
Solyc01g103370.2.1 Tomato endoplasmic reticulum 87.06 86.63
GSMUA_Achr10P... Banana cytosol 83.08 82.67
Zm00001d003588_P002 Maize cytosol, extracellular 61.19 82.55
CDX73855 Canola cytosol 83.58 81.55
CDY56593 Canola cytosol 83.58 81.55
AT3G11730.1 Thale cress cytosol 83.08 81.46
Bra001418.1-P Field mustard cytosol, extracellular 83.08 81.07
Bra038676.1-P Field mustard vacuole 83.08 81.07
CDY47919 Canola vacuole 83.08 81.07
Zm00001d035741_P002 Maize cytosol 80.6 79.02
TraesCS1A01G015300.1 Wheat cytosol, extracellular 80.6 79.02
TraesCS1D01G013200.1 Wheat cytosol, extracellular 80.1 78.92
EES18842 Sorghum cytosol 80.1 78.54
TraesCS1B01G019100.2 Wheat golgi 80.1 78.54
KRH04201 Soybean cytosol, extracellular 77.61 77.23
KRH57496 Soybean endoplasmic reticulum 77.11 76.73
EES10859 Sorghum cytosol 78.61 76.33
KRH01059 Soybean endoplasmic reticulum 76.12 75.74
TraesCS2B01G327900.1 Wheat cytosol 76.12 74.27
KRH40178 Soybean endoplasmic reticulum 74.63 74.26
KRH66494 Soybean endoplasmic reticulum 74.63 73.89
TraesCS2A01G311000.3 Wheat cytosol 76.12 71.83
TraesCS2D01G309200.2 Wheat cytosol 75.62 71.36
HORVU1Hr1G001910.9 Barley endoplasmic reticulum 79.1 70.67
Zm00001d005215_P001 Maize cytosol 51.24 67.76
GSMUA_Achr6P17450_001 Banana cytosol 83.58 66.67
KRH48822 Soybean cytosol, endoplasmic reticulum 52.24 66.46
Zm00001d003789_P002 Maize extracellular, plasma membrane 74.63 56.82
KRH29838 Soybean endoplasmic reticulum 57.21 53.74
KRH24835 Soybean cytosol 56.72 53.27
KRH36193 Soybean endoplasmic reticulum, extracellular 57.21 53.24
KRH23030 Soybean endoplasmic reticulum 56.72 53.02
KRH10292 Soybean cytosol 56.72 53.02
KRH01606 Soybean endoplasmic reticulum 56.72 52.78
KRG90563 Soybean cytosol 56.72 52.78
KRH70501 Soybean endoplasmic reticulum 56.72 52.78
KRH11646 Soybean endoplasmic reticulum 44.78 42.65
KRH36659 Soybean cytosol 44.78 42.65
KRG93957 Soybean endoplasmic reticulum 42.79 40.76
KRH58242 Soybean endoplasmic reticulum 42.79 40.76
Protein Annotations
EntrezGene:100796206MapMan:22.8.1.4Gene3D:3.40.50.300EMBL:ACUP02007703EnsemblPlantsGene:GLYMA_12G165300GO:GO:0000166
GO:GO:0003674GO:GO:0003824GO:GO:0003924GO:GO:0005488GO:GO:0005525GO:GO:0016787
EnsemblPlants:KRH26285ProteinID:KRH26285ProteinID:KRH26285.1EMBL:L14929InterPro:P-loop_NTPasePFAM:PF00071
PRINTS:PR00449PFscan:PS51419PANTHER:PTHR24073PANTHER:PTHR24073:SF827UniProt:Q43462SMART:SM00173
SMART:SM00174SMART:SM00175SMART:SM00176SMART:SM00177SUPFAM:SSF52540InterPro:Small_GTP-bd_dom
InterPro:Small_GTPaseTIGRFAMs:TIGR00231UniParc:UPI00000ACC2A:::
Description
hypothetical protein
Coordinates
chr12:+:31950367..31952980
Molecular Weight (calculated)
22387.7 Da
IEP (calculated)
4.904
GRAVY (calculated)
-0.213
Length
201 amino acids
Sequence
(BLAST)
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DSYVDSYIST IGVDFKIRTV ELEGKTVKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDV TEMESFNNVK
101: QWLNEIDRYA NDTVCKLLVG NKSDLVDNKV VDSLTAKAFA DELGIPFLET SAKDSINVEQ AFLTMAAEIK KKMGSQTTTG KSAESVQMKG QPIPQKSNCC
201: G
Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)
001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ
Arabidopsis Description
RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.