Factsheet for TraesCS1B01G019100.2

Subcellular Localization

min:

: max

Winner_takes_all: golgi

Predictor Summary:

cytosol 2
extracellular 3
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	golgi
Any Predictor:	cytosol, secretory
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

golgi: 25769308

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	TraesCS1A01G124100.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS1B01G143000.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS1D01G130300.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS3A01G104300.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS3B01G122600.1	AT3G13710.1	21798944
AT3G11730.1	TraesCS3D01G106500.1	AT3G13710.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	98.54	99.02
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	98.54	98.54
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	96.59	88.0
EES18842	Sorghum	cytosol	87.32	87.32
Zm00001d035741_P002	Maize	cytosol	86.83	86.83
VIT_12s0035g01150.t01	Wine grape	vacuole	80.0	81.19
KRH06045	Soybean	cytosol	79.51	81.09
KRH26285	Soybean	endoplasmic reticulum	78.54	80.1
GSMUA_Achr10P...	Banana	cytosol	77.07	78.22
CDY47919	Canola	vacuole	78.54	78.16
Bra038676.1-P	Field mustard	vacuole	78.54	78.16
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	76.59	77.72
PGSC0003DMT400064019	Potato	cytosol, extracellular	76.1	77.23
CDY56593	Canola	cytosol	76.59	76.21
CDX73855	Canola	cytosol	76.59	76.21
AT3G11730.1	Thale cress	cytosol	76.1	76.1
Bra001418.1-P	Field mustard	cytosol, extracellular	76.1	75.73
TraesCS2B01G327900.1	Wheat	cytosol	76.1	75.73
TraesCS3B01G070300.2	Wheat	cytosol	72.68	73.4
TraesCS3B01G230700.1	Wheat	cytosol	73.66	68.33
GSMUA_Achr6P17450_001	Banana	cytosol	79.02	64.29
TraesCS5B01G489300.1	Wheat	golgi	54.15	51.87
TraesCS3B01G388900.1	Wheat	cytosol	54.15	51.39
TraesCS1B01G295600.1	Wheat	cytosol	53.17	50.93
TraesCS5B01G255300.1	Wheat	cytosol	41.46	45.45
TraesCS2B01G350600.1	Wheat	cytosol	43.41	42.38
TraesCS6B01G230400.2	Wheat	cytosol	43.41	42.38
TraesCS3B01G547700.1	Wheat	plastid	33.17	32.69
TraesCS2B01G542700.1	Wheat	cytosol	34.63	32.27

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF827	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
EnsemblPlantsGene:TraesCS1B01G019100	EnsemblPlants:TraesCS1B01G019100.2	TIGR:cd01869	:	:	:

Description

No Description!

Coordinates

chr1B:-:9069777..9073038

Molecular Weight (calculated)

22906.1 Da

IEP (calculated)

5.097

GRAVY (calculated)

-0.238

Length

205 amino acids

Sequence
(BLAST)

001: MSTSEYDYLF KLLLIGDSSV GKSCLLLRFA DDAYVDTYIS TIGVDFKIRT VELDGKSVKL QIWDTAGQER FRTITSSYYR GAHGIIIVYD VTDRESFNNV
101: KQWLSEIDRY ASDSVCKLLV GNKCDLVDSK VVDTEEAKAF AESLGMNFLE TSAKESINVE TAFLTMSSEI KNKMASQPAA ERKSTVHVHM KGQPIQQQNS
201: SCCSS

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.