Factsheet for Bra001418.1-P

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, cytosol

Predictor Summary:

nucleus 2
cytosol 3
golgi 3
endoplasmic reticulum 3
mitochondrion 1
extracellular 3
plasma membrane 2
vacuole 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002620.1-P
Bra003171.1-P
Bra004965.1-P
Bra005924.1-P
Bra007047.1-P
Bra021504.1-P
Bra027406.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	Bra004965.1-P	AT2G40380.1	21798944
AT3G11730.1	Bra021504.1-P	AT3G13710.1	21798944
AT3G11730.1	Bra027406.1-P	AT3G13710.1	21798944
AT3G11730.1	Bra003171.1-P	AT3G54120.1	21798944
AT3G11730.1	Bra007047.1-P	AT3G54120.1	21798944
AT3G11730.1	Bra005924.1-P	AT5G07110.1	21798944
AT3G11730.1	Bra002620.1-P	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73855	Canola	cytosol	99.51	99.51
CDY56593	Canola	cytosol	99.51	99.51
AT3G11730.1	Thale cress	cytosol	97.09	97.56
Bra038676.1-P	Field mustard	vacuole	94.17	94.17
VIT_12s0035g01150.t01	Wine grape	vacuole	85.92	87.62
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	83.5	85.15
PGSC0003DMT400064019	Potato	cytosol, extracellular	83.5	85.15
KRH06045	Soybean	cytosol	82.04	84.08
KRH26285	Soybean	endoplasmic reticulum	81.07	83.08
GSMUA_Achr10P...	Banana	cytosol	77.67	79.21
Zm00001d003588_P002	Maize	cytosol, extracellular	55.83	77.18
Bra012658.1-P	Field mustard	cytosol	74.76	76.24
TraesCS1B01G019100.2	Wheat	golgi	75.73	76.1
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	75.73	76.1
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	75.24	75.98
Bra017497.1-P	Field mustard	cytosol	73.3	74.75
Bra022113.1-P	Field mustard	cytosol	73.3	74.75
Bra024956.1-P	Field mustard	cytosol	73.3	74.75
Zm00001d035741_P002	Maize	cytosol	74.27	74.63
EES10859	Sorghum	cytosol	74.27	73.91
EES18842	Sorghum	cytosol	73.3	73.66
TraesCS2B01G327900.1	Wheat	cytosol	73.3	73.3
TraesCS2A01G311000.3	Wheat	cytosol	73.3	70.89
TraesCS2D01G309200.2	Wheat	cytosol	72.82	70.42
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	74.27	68.0
GSMUA_Achr6P17450_001	Banana	cytosol	78.16	63.89
Zm00001d005215_P001	Maize	cytosol	46.12	62.5
Bra019475.1-P	Field mustard	cytosol	57.77	55.09
Bra002527.1-P	Field mustard	cytosol	57.77	55.09
Bra006690.1-P	Field mustard	cytosol	57.77	55.09
Bra020282.1-P	Field mustard	cytosol	57.77	55.09
Bra040162.1-P	Field mustard	cytosol	72.82	54.74
Zm00001d003789_P002	Maize	extracellular, plasma membrane	69.42	54.17
Bra033830.1-P	Field mustard	cytosol	50.0	53.37
Bra005767.1-P	Field mustard	cytosol	55.83	53.0
Bra029803.1-P	Field mustard	cytosol	56.31	51.33
Bra021065.1-P	Field mustard	cytosol	47.09	46.19
Bra011645.1-P	Field mustard	cytosol	47.09	45.97
Bra026231.1-P	Field mustard	cytosol	47.09	45.97
Bra017733.1-P	Field mustard	cytosol	45.63	44.55
Bra003149.1-P	Field mustard	cytosol	56.8	43.49
Bra038265.1-P	Field mustard	cytosol	57.28	31.38

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra001418	EnsemblPlants:Bra001418.1	EnsemblPlants:Bra001418.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4CB39	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF666	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002540726	SEG:seg

Description

AT3G11730 (E=3e-106) ATFP8, ATRABD1, RABD1 | ATFP8; GTP binding / GTP-dependent protein binding / myosin XI tail binding

Coordinates

chrA03:-:16285599..16287693

Molecular Weight (calculated)

22704.9 Da

IEP (calculated)

4.890

GRAVY (calculated)

-0.327

Length

206 amino acids

Sequence
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVVYDC TEMESFNNVK
101: QWLSEIDRYA NDSVCKLLIG NKNDMVESKV VSTETGKALA DELGIPFLET SAKDSTNVEQ AFLTIAGEIK KKMGSQTNAN KTSGSGTVQM KGQPIQQNNG
201: GGCCGQ

Best Arabidopsis Sequence Match ( AT3G11730.1 )
(BLAST)

001: MSNEYDYLFK LLLIGDSSVG KSCLLLRFAD DAYIDSYIST IGVDFKIRTI EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIIVYDC TEMESFNNVK
101: QWLSEIDRYA NESVCKLLIG NKNDMVESKV VSTETGRALA DELGIPFLET SAKDSINVEQ AFLTIAGEIK KKMGSQTNAN KTSGPGTVQM KGQPIQQNNG
201: GCCGQ

Arabidopsis Description

RABD1Ras-related protein RABD1 [Source:UniProtKB/Swiss-Prot;Acc:Q9ZRE2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.