Factsheet for Bra004965.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1
plasma membrane 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Plant-mPloc:	plasma membrane
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000056.1-P
Bra004965.1-P
Bra005112.1-P
Bra005924.1-P
Bra006975.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra021674.1-P
Bra022817.1-P
Bra028548.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40380.1	Bra021674.1-P	AT2G30880.1	21798944
AT2G40380.1	Bra022817.1-P	AT2G30880.1	21798944
AT2G40380.1	Bra000056.1-P	AT2G38360.1	21798944
AT2G40380.1	Bra005112.1-P	AT2G38360.1	21798944
AT2G40380.1	Bra004965.1-P	AT2G40380.1	21798944
AT2G40380.1	Bra006975.1-P	AT3G53180.1	21798944
AT2G40380.1	Bra028548.1-P	AT3G53180.1	21798944
AT2G40380.1	Bra010452.1-P	AT4G25660.1	21798944
AT2G40380.1	Bra013908.1-P	AT4G25660.1	21798944
AT2G40380.1	Bra013910.1-P	AT4G25660.1	21798944
AT2G40380.1	Bra005924.1-P	AT5G07110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX74794	Canola	plastid	99.06	99.06
AT2G40380.1	Thale cress	plastid	90.14	90.14
Bra007216.1-P	Field mustard	plastid	76.06	79.8
Bra003228.1-P	Field mustard	plastid	78.4	79.15
Bra017037.1-P	Field mustard	plastid	30.52	75.58
Bra007796.1-P	Field mustard	plastid	30.05	74.42
Solyc06g050570.1.1	Tomato	plastid	70.42	68.81
PGSC0003DMT400061546	Potato	plastid	69.95	68.35
Bra009110.1-P	Field mustard	plastid	68.08	67.44
KRH73238	Soybean	plastid	63.85	63.26
KRH14895	Soybean	plastid	63.85	63.26
KRH54835	Soybean	endoplasmic reticulum, extracellular, vacuole	30.52	60.19
Bra000056.1-P	Field mustard	plastid	55.87	53.6
Bra005924.1-P	Field mustard	plastid	52.58	51.38
Bra005112.1-P	Field mustard	plastid	38.03	48.21
Bra037983.1-P	Field mustard	extracellular, plasma membrane	27.7	42.14
Bra027406.1-P	Field mustard	plasma membrane	31.46	37.02
Bra021504.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	30.99	36.26
Bra014355.1-P	Field mustard	cytosol, plasma membrane, plastid	31.92	35.98
Bra025954.1-P	Field mustard	plasma membrane	30.05	34.78
Bra031001.1-P	Field mustard	plasma membrane	28.64	33.7
Bra011125.1-P	Field mustard	mitochondrion	26.29	32.0
Bra002833.1-P	Field mustard	plastid	26.76	30.81
Bra038009.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	26.76	30.65
Bra018602.1-P	Field mustard	plastid	28.17	28.85
Bra030561.1-P	Field mustard	plasma membrane	23.0	27.53
Bra021503.1-P	Field mustard	plastid	22.54	23.08
Bra021502.1-P	Field mustard	plastid	22.07	21.96

Protein Annotations

MapMan:22.8.4.3.2	EnsemblPlantsGene:Bra004965	EnsemblPlants:Bra004965.1	EnsemblPlants:Bra004965.1-P	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005783	GO:GO:0005794	GO:GO:0005802
GO:GO:0006810	GO:GO:0008150	GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	UniProt:M4CL79
PFAM:PF03208	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	InterPro:Prenylated_rab_accept_PRA1	TMHMM:TMhelix	UniParc:UPI00025480E7
SEG:seg	:	:	:	:	:

Description

AT2G40380 (E=3e-069) PRA1.B2 | PRA1.B2 (PRENYLATED RAB ACCEPTOR 1.B2)

Coordinates

chrA05:+:2673816..2674457

Molecular Weight (calculated)

22923.9 Da

IEP (calculated)

10.163

GRAVY (calculated)

0.520

Length

213 amino acids

Sequence
(BLAST)

001: MSSPATLPVT NQQATQSQPP INTPAFRTFL SRLSSSLRAS LSQRRPWLEL IDRTSFARPD SLTDSISRIR KNLAYFKVNY AAIVSLVLAF SLLSHPFSLL
101: VLLSLLGAWM FLYLFRSSDQ PLVIFGRGFS DRETLLGLVV TTIVVVFMTS VGSLLTSALT VGVAVVCLHG AFRVPDDLFL DEQEPANAGL ISFIGNSAAA
201: TSAAAASVVA GRV

Best Arabidopsis Sequence Match ( AT2G40380.1 )
(BLAST)

001: MSSSPAILPV TNQQAATQSQ PPINSHAFRT FLSRLSSSLR ESLSQRRPWL ELVDRSSFAR PDSLTDSFSR IRKNLAYFKV NYSAIVSLVL AFSLLSHPFS
101: LLVLLSLLGS WMFLYLFRSS DQPLVLFGRS FSDRETLLGL VLTTIVVVFM TSVGSLLTSA LTIGIAIVCL HGAFRVPDDL FLDEQEPANA GLLSFIGNSA
201: ATSAAASVVA GRV

Arabidopsis Description

PRA1B2PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VRS5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.