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Tomato
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Tomato
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • peroxisome 1
  • plasma membrane 2
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:peroxisome, plastid, secretory
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:peroxisome
Plant-mPloc:plasma membrane
Predotar:plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
 plastid: 22908117
msms PMID: 22908117 doi
C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech
Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.
PPI

Inferred distinct locusB in Crop

locusBlocations
Solyc01g056390.1.1
Solyc01g056400.1.1
Solyc01g056430.1.1
Solyc01g056450.1.1
Solyc02g082060.1.1
Solyc05g021100.2.1
Solyc06g011290.1.1
Solyc06g011330.1.1
Solyc06g050570.1.1
Solyc08g081730.2.1
Solyc10g076360.1.1
Solyc10g083550.1.1
Solyc10g083830.1.1
Solyc10g083840.1.1
Solyc10g083850.1.1

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40380.1 Solyc05g021100.2.1 AT2G30880.1 21798944
AT2G40380.1 Solyc10g076360.1.1 AT2G38360.1 21798944
AT2G40380.1 Solyc06g050570.1.1 AT2G40380.1 21798944
AT2G40380.1 Solyc01g056390.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc01g056400.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc01g056430.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc01g056450.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc06g011290.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc06g011330.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc10g083550.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc10g083830.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc10g083840.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc10g083850.1.1 AT3G53180.1 21798944
AT2G40380.1 Solyc02g082060.1.1 AT4G25660.1 21798944
AT2G40380.1 Solyc08g081730.2.1 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
PGSC0003DMT400061546 Potato plastid 98.17 98.17
KRH54835 Soybean endoplasmic reticulum, extracellular, vacuole 38.07 76.85
KRH14895 Soybean plastid 75.69 76.74
KRH73238 Soybean plastid 75.23 76.28
AT3G56110.1 Thale cress plastid 68.35 71.29
Bra003228.1-P Field mustard plastid 68.81 71.09
CDX74794 Canola plastid 69.27 70.89
CDX67633 Canola plastid 68.35 70.62
CDY31997 Canola plastid 67.89 70.48
Bra004965.1-P Field mustard plastid 68.81 70.42
Bra009110.1-P Field mustard plastid 69.27 70.23
CDX70153 Canola plastid 69.27 70.23
CDY18870 Canola plastid 66.97 69.86
CDX72173 Canola plastid 64.22 68.97
CDY27245 Canola plastid 63.76 68.47
Bra007216.1-P Field mustard plastid 63.76 68.47
AT2G40380.1 Thale cress plastid 65.6 67.14
CDY05662 Canola plastid 20.18 60.27
Solyc10g076360.1.1 Tomato plastid 60.55 58.93
Bra017037.1-P Field mustard plastid 22.94 58.14
CDY25186 Canola plastid 22.48 56.98
CDY41253 Canola plastid 22.48 56.98
Bra007796.1-P Field mustard plastid 22.48 56.98
AT5G05380.2 Thale cress plasma membrane 71.56 54.93
Solyc03g121460.1.1 Tomato plastid 34.4 41.21
Solyc09g066000.1.1 Tomato mitochondrion, plastid 33.03 40.91
Solyc01g097230.2.1 Tomato plastid 24.31 32.92
Solyc09g083320.1.1 Tomato plasma membrane 23.39 30.36
Solyc07g066190.1.1 Tomato plasma membrane, plastid 24.31 27.46
Protein Annotations
EnsemblPlants:Solyc06g050570.1.1EnsemblPlantsGene:Solyc06g050570.1GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317PANTHER:PTHR19317:SF34PFAM:PF03208SEG:segTMHMM:TMhelixUniParc:UPI0002766B21
UniProt:K4C5K1MapMan:22.8.4.3.2::::
Description
PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:K4C5K1]
Coordinates
chr6:-:33277794..33278450
Molecular Weight (calculated)
23176.1 Da
IEP (calculated)
10.670
GRAVY (calculated)
0.622
Length
218 amino acids
Sequence
(BLAST)
001: MASPVTLPIS SPQSAATAGS QSQAPISTPA FRSFISRLSS SIRQGFAQRR PWLELLDRTS FARPDSVAEA ASRIRKNFSY FRVNYVTLLA GVLALSLLSH
101: PFSLLVLLAL LGGWFFLYLF RPSDQPVVIF GRTFSDRETL GILVVFTIVV VFLTSVGSLL ISALLVGLAI VSAHGAFRVP EDLFLDDQEP ANAGFLSFLG
201: GAASSAAAAA APAVAARV
Best Arabidopsis Sequence Match ( AT5G05380.3 )
(BLAST)
001: MLRCRERSMV RVITRDHDVN TGNRLLQKKS IHSYGPLIHA PSSHPHAQSC VMMANPPTLP ISDHSGGGSQ SQQPVSTPAF RTFLSRLSSS IRQSLSQRRP
101: WLELVDRSAI SRPESLTDAY SRIRRNLPYF KVNYVTIVSL VLALSLLSHP FSLLVLLCLF CAWIFLYLFR PSDQPLVVLG RTFSDRETLG VLVILTIVVV
201: FLTSVGSLLT SALMIGFGIV CLHGAFRVPE DLFLDDQEPA NTGLLSFLSG AATSAAVAAA STPASGRV
Arabidopsis Description
PRA1.B3prenylated RAB acceptor 1.B3 [Source:TAIR;Acc:AT5G05380]
SUBAcon: [plasma membrane]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.