Skip to main content
crop-pal logo
Canola
Search for another protein from :
Canola
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • plastid 7
  • peroxisome 1
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 1
  • plasma membrane 1
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:peroxisome, plastid
BaCelLo:plastid
ChloroP:plastid
iPSORT:plastid
MultiLoc:peroxisome
Predotar:plastid
PProwler:secretory
TargetP:plastid
WoLF PSORT:plastid
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
CDX67559
CDX73575
CDX74794
CDX78151
CDX81033
CDX89402
CDX89404
CDX94426
CDX94429
CDX97786
CDY07736
CDY13313
CDY18870
CDY23978
CDY29635
CDY49480
CDY54457
CDY58876
CDY61529
CDY63156
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G40380.1 CDX97786 AT2G30880.1 21798944
AT2G40380.1 CDY23978 AT2G30880.1 21798944
AT2G40380.1 CDY29635 AT2G30880.1 21798944
AT2G40380.1 CDY07736 AT2G38360.1 21798944
AT2G40380.1 CDY54457 AT2G38360.1 21798944
AT2G40380.1 CDY61529 AT2G38360.1 21798944
AT2G40380.1 CDY63156 AT2G38360.1 21798944
AT2G40380.1 CDX74794 AT2G40380.1 21798944
AT2G40380.1 CDY18870 AT2G40380.1 21798944
AT2G40380.1 CDX67559 AT3G53180.1 21798944
AT2G40380.1 CDX73575 AT3G53180.1 21798944
AT2G40380.1 CDX78151 AT3G53180.1 21798944
AT2G40380.1 CDY13313 AT3G53180.1 21798944
AT2G40380.1 CDX89402 AT4G25660.1 21798944
AT2G40380.1 CDX89404 AT4G25660.1 21798944
AT2G40380.1 CDX94426 AT4G25660.1 21798944
AT2G40380.1 CDX94429 AT4G25660.1 21798944
AT2G40380.1 CDY49480 AT4G25660.1 21798944
AT2G40380.1 CDY66007 AT4G25660.1 21798944
AT2G40380.1 CDX81033 AT5G07110.1 21798944
AT2G40380.1 CDY58876 AT5G07110.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX74794 Canola plastid 97.61 95.77
AT2G40380.1 Thale cress plastid 89.95 88.26
CDY27245 Canola plastid 75.6 77.83
CDX72173 Canola plastid 75.12 77.34
CDX67633 Canola plastid 77.51 76.78
CDY31997 Canola plastid 75.6 75.24
CDY05662 Canola plastid 25.84 73.97
CDY25186 Canola plastid 29.19 70.93
CDY41253 Canola plastid 27.75 67.44
Solyc06g050570.1.1 Tomato plastid 69.86 66.97
PGSC0003DMT400061546 Potato plastid 69.38 66.51
CDX70153 Canola plastid 67.94 66.05
KRH14895 Soybean plastid 64.11 62.33
KRH73238 Soybean plastid 63.64 61.86
KRH54835 Soybean endoplasmic reticulum, extracellular, vacuole 31.58 61.11
CDX80758 Canola plastid 55.5 54.21
CDY07736 Canola plastid 55.5 52.25
CDY63156 Canola plastid 54.07 51.83
CDX81033 Canola plastid 53.11 50.92
CDY58876 Canola plastid 53.11 50.92
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 41.15 47.25
CDY61529 Canola plastid 26.32 43.65
CDY33064 Canola cytosol, plasma membrane, plastid 33.97 37.97
CDY24050 Canola cytosol, plasma membrane, plastid 33.49 37.43
CDY23634 Canola plasma membrane 32.06 37.02
CDX97509 Canola plasma membrane 32.06 37.02
CDY37483 Canola plasma membrane 32.06 36.81
CDY51735 Canola plasma membrane 32.06 36.81
CDY26125 Canola cytosol, plasma membrane, plastid 32.54 35.98
CDY08228 Canola plasma membrane 31.1 34.39
CDX81845 Canola plasma membrane 29.67 34.25
CDY26225 Canola plasma membrane 30.14 34.24
CDY59501 Canola plasma membrane 29.19 33.15
CDY43514 Canola mitochondrion 27.27 32.57
CDY32804 Canola plastid 27.75 30.85
CDY50022 Canola cytosol, endoplasmic reticulum, plasma membrane 27.27 30.65
CDY51077 Canola cytosol, endoplasmic reticulum, plasma membrane 26.32 29.73
CDY17405 Canola plastid 27.27 29.69
CDY06788 Canola plastid 27.27 29.38
CDX93539 Canola plastid 29.19 29.33
CDX95035 Canola plastid 28.23 28.37
CDX86646 Canola plasma membrane 23.45 27.53
CDY15494 Canola plasma membrane 22.97 26.97
CDY37482 Canola plastid 23.45 23.45
CDY51734 Canola plastid 22.97 22.97
CDY55133 Canola plasma membrane 22.49 22.07
CDY51733 Canola plastid 21.05 20.56
Protein Annotations
EnsemblPlants:CDY18870EnsemblPlantsGene:GSBRNA2T00006056001GO:A0A078FWR2GO:GO:0005575GO:GO:0016020GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1PANTHER:PTHR19317PANTHER:PTHR19317:SF34PFAM:PF03208ProteinID:CDY18870ProteinID:CDY18870.1
SEG:segTMHMM:TMhelixUniParc:UPI0004EB5843UniProt:A0A078FWR2MapMan:22.8.4.3.2:
Description
BnaC04g04800DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078FWR2]
Coordinates
chrLK032090:-:67750..68632
Molecular Weight (calculated)
22500.3 Da
IEP (calculated)
9.753
GRAVY (calculated)
0.547
Length
209 amino acids
Sequence
(BLAST)
001: MSSPAILPVT NQQATQSNTP AFRTFLSRLS SSLRDSLSQR RPWLELIDRT SFARPDSLTD SISRIRKNLA YFKVNYAAIV SLVLAFSLLS HPFSLLVLLS
101: LLGAWMFLYL FRSSDQPLVI FGRGFSDRET LLGLVVATVV VVFMTSVGSL LTSALTVGVA VVCLHGAFRV PDDLFLDEQE PANAGLLSFI GNSAAATSAA
201: AASVVAGRV
Best Arabidopsis Sequence Match ( AT2G40380.1 )
(BLAST)
001: MSSSPAILPV TNQQAATQSQ PPINSHAFRT FLSRLSSSLR ESLSQRRPWL ELVDRSSFAR PDSLTDSFSR IRKNLAYFKV NYSAIVSLVL AFSLLSHPFS
101: LLVLLSLLGS WMFLYLFRSS DQPLVLFGRS FSDRETLLGL VLTTIVVVFM TSVGSLLTSA LTIGIAIVCL HGAFRVPDDL FLDEQEPANA GLLSFIGNSA
201: ATSAAASVVA GRV
Arabidopsis Description
PRA1B2PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VRS5]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.