Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 7
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX74794 | Canola | plastid | 91.08 | 91.08 |
| Bra004965.1-P | Field mustard | plastid | 90.14 | 90.14 |
| CDY18870 | Canola | plastid | 88.26 | 89.95 |
| AT3G56110.1 | Thale cress | plastid | 77.93 | 79.43 |
| Solyc06g050570.1.1 | Tomato | plastid | 67.14 | 65.6 |
| PGSC0003DMT400061546 | Potato | plastid | 66.67 | 65.14 |
| KRH14895 | Soybean | plastid | 62.91 | 62.33 |
| KRH54835 | Soybean | endoplasmic reticulum, extracellular, vacuole | 31.46 | 62.04 |
| KRH73238 | Soybean | plastid | 62.44 | 61.86 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 30.05 | 54.24 |
| AT5G05380.2 | Thale cress | plasma membrane | 71.83 | 53.87 |
| AT2G38360.1 | Thale cress | plastid | 54.46 | 52.73 |
| AT5G01640.1 | Thale cress | plastid | 54.93 | 52.47 |
| AT5G07110.1 | Thale cress | plastid | 50.23 | 49.54 |
| AT1G55190.1 | Thale cress | plasma membrane | 31.92 | 35.98 |
| AT3G13710.1 | Thale cress | plasma membrane | 30.52 | 34.57 |
| AT3G13720.1 | Thale cress | cytosol, plasma membrane, plastid | 30.05 | 34.04 |
| AT1G17700.1 | Thale cress | plasma membrane | 28.64 | 33.89 |
| AT5G56230.1 | Thale cress | plasma membrane, plastid | 27.7 | 31.72 |
| AT4G29658.2 | Thale cress | plastid | 25.35 | 28.42 |
| AT1G08770.1 | Thale cress | plastid | 26.76 | 27.27 |
| AT1G55640.1 | Thale cress | endoplasmic reticulum, plasma membrane, vacuole | 23.0 | 26.2 |
| AT1G04260.1 | Thale cress | plasma membrane | 21.6 | 25.27 |
Protein Annotations
| MapMan:22.8.4.3.2 | EntrezGene:818631 | UniProt:A0A178VRS5 | ProteinID:AAD25672.1 | ProteinID:AEC09820.1 | EMBL:AK175728 |
| EMBL:AK176230 | ArrayExpress:AT2G40380 | EnsemblPlantsGene:AT2G40380 | RefSeq:AT2G40380 | TAIR:AT2G40380 | RefSeq:AT2G40380-TAIR-G |
| EnsemblPlants:AT2G40380.1 | TAIR:AT2G40380.1 | EMBL:BT010639 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005783 |
| GO:GO:0005794 | GO:GO:0005802 | GO:GO:0006810 | GO:GO:0008150 | GO:GO:0010008 | GO:GO:0016020 |
| GO:GO:0016021 | GO:GO:0016192 | RefSeq:NP_181569.1 | ProteinID:OAP08478.1 | PFAM:PF03208 | PO:PO:0000293 |
| Symbol:PRA1.B2 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF34 | InterPro:Prenylated_rab_accept_PRA1 | UniProt:Q9SIY7 | TMHMM:TMhelix |
| UniParc:UPI00000A69B4 | SEG:seg | : | : | : | : |
Description
PRA1B2PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VRS5]
Coordinates
chr2:-:16864446..16865587
Molecular Weight (calculated)
23160.1 Da
IEP (calculated)
9.753
GRAVY (calculated)
0.459
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSSPAILPV TNQQAATQSQ PPINSHAFRT FLSRLSSSLR ESLSQRRPWL ELVDRSSFAR PDSLTDSFSR IRKNLAYFKV NYSAIVSLVL AFSLLSHPFS
101: LLVLLSLLGS WMFLYLFRSS DQPLVLFGRS FSDRETLLGL VLTTIVVVFM TSVGSLLTSA LTIGIAIVCL HGAFRVPDDL FLDEQEPANA GLLSFIGNSA
201: ATSAAASVVA GRV
101: LLVLLSLLGS WMFLYLFRSS DQPLVLFGRS FSDRETLLGL VLTTIVVVFM TSVGSLLTSA LTIGIAIVCL HGAFRVPDDL FLDEQEPANA GLLSFIGNSA
201: ATSAAASVVA GRV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.