CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
peroxisome 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	peroxisome, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	peroxisome
Predotar:	plastid
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX67559
CDX73575
CDX74794
CDX78151
CDX81033
CDX89402
CDX89404
CDX94426
CDX94429
CDX97786
CDY07736
CDY13313
CDY18870
CDY23978
CDY29635
CDY49480
CDY54457
CDY58876
CDY61529
CDY63156
CDY66007

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G40380.1	CDX97786	AT2G30880.1	21798944
AT2G40380.1	CDY23978	AT2G30880.1	21798944
AT2G40380.1	CDY29635	AT2G30880.1	21798944
AT2G40380.1	CDY07736	AT2G38360.1	21798944
AT2G40380.1	CDY54457	AT2G38360.1	21798944
AT2G40380.1	CDY61529	AT2G38360.1	21798944
AT2G40380.1	CDY63156	AT2G38360.1	21798944
AT2G40380.1	CDX74794	AT2G40380.1	21798944
AT2G40380.1	CDY18870	AT2G40380.1	21798944
AT2G40380.1	CDX67559	AT3G53180.1	21798944
AT2G40380.1	CDX73575	AT3G53180.1	21798944
AT2G40380.1	CDX78151	AT3G53180.1	21798944
AT2G40380.1	CDY13313	AT3G53180.1	21798944
AT2G40380.1	CDX89402	AT4G25660.1	21798944
AT2G40380.1	CDX89404	AT4G25660.1	21798944
AT2G40380.1	CDX94426	AT4G25660.1	21798944
AT2G40380.1	CDX94429	AT4G25660.1	21798944
AT2G40380.1	CDY49480	AT4G25660.1	21798944
AT2G40380.1	CDY66007	AT4G25660.1	21798944
AT2G40380.1	CDX81033	AT5G07110.1	21798944
AT2G40380.1	CDY58876	AT5G07110.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra004965.1-P	Field mustard	plastid	99.06	99.06
CDY18870	Canola	plastid	95.77	97.61
AT2G40380.1	Thale cress	plastid	91.08	91.08
CDY27245	Canola	plastid	76.53	80.3
CDX72173	Canola	plastid	76.06	79.8
CDX67633	Canola	plastid	77.46	78.2
CDY05662	Canola	plastid	26.76	78.08
CDY31997	Canola	plastid	76.53	77.62
CDY25186	Canola	plastid	30.05	74.42
CDY41253	Canola	plastid	28.64	70.93
Solyc06g050570.1.1	Tomato	plastid	70.89	69.27
PGSC0003DMT400061546	Potato	plastid	70.42	68.81
CDX70153	Canola	plastid	68.54	67.91
KRH73238	Soybean	plastid	64.32	63.72
KRH14895	Soybean	plastid	64.32	63.72
KRH54835	Soybean	endoplasmic reticulum, extracellular, vacuole	30.99	61.11
CDX80758	Canola	plastid	56.34	56.07
CDY63156	Canola	plastid	55.87	54.59
CDY07736	Canola	plastid	56.81	54.5
CDX81033	Canola	plastid	52.58	51.38
CDY58876	Canola	plastid	52.58	51.38
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	39.44	46.15
CDY61529	Canola	plastid	26.29	44.44
CDY33064	Canola	cytosol, plasma membrane, plastid	34.27	39.04
CDY24050	Canola	cytosol, plasma membrane, plastid	33.8	38.5
CDY26125	Canola	cytosol, plasma membrane, plastid	33.33	37.57
CDY51735	Canola	plasma membrane	31.92	37.36
CDY23634	Canola	plasma membrane	31.46	37.02
CDX97509	Canola	plasma membrane	31.46	37.02
CDY37483	Canola	plasma membrane	31.46	36.81
CDY08228	Canola	plasma membrane	31.92	35.98
CDX81845	Canola	plasma membrane	29.58	34.81
CDY26225	Canola	plasma membrane	30.05	34.78
CDY59501	Canola	plasma membrane	29.11	33.7
CDY43514	Canola	mitochondrion	26.76	32.57
CDY50022	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.76	30.65
CDY06788	Canola	plastid	27.7	30.41
CDY51077	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.29	30.27
CDY32804	Canola	plastid	26.29	29.79
CDX93539	Canola	plastid	28.17	28.85
CDY17405	Canola	plastid	25.82	28.65
CDX86646	Canola	plasma membrane	23.47	28.09
CDX95035	Canola	plastid	27.23	27.88
CDY15494	Canola	plasma membrane	23.0	27.53
CDY37482	Canola	plastid	23.47	23.92
CDY55133	Canola	plasma membrane	23.0	23.0
CDY51734	Canola	plastid	22.54	22.97
CDY51733	Canola	plastid	21.6	21.5

Protein Annotations

EnsemblPlants:CDX74794	EnsemblPlantsGene:GSBRNA2T00116767001	GO:A0A078CF71	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34
PFAM:PF03208	ProteinID:CDX74794	ProteinID:CDX74794.1	SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE0061
MapMan:22.8.4.3.2	:	:	:	:	:

Description

BnaA05g05400D

Coordinates

chrLK031802:+:630795..631789

Molecular Weight (calculated)

22953.9 Da

IEP (calculated)

10.163

GRAVY (calculated)

0.515

Length

213 amino acids

Sequence
(BLAST)

001: MSSPATLPVT NQQATQSQPP INTPAFRTFL SRLSSSLRAS LSQRRPWLEL IDRTSFARPD SLTDSISRIR KNLAYFKVNY AAIVSLVLAF SLLSHPFSLL
101: VLLSLLGAWM FLYLFRSSDQ PLVIFGRSFS DRETLLGLVV TTIVVVFMTS VGSLLTSALT VGVAVVCLHG AFRVPDDLFL DEQEPANAGL LSFIGNSAAA
201: TSAAAASVVA GRV

Best Arabidopsis Sequence Match ( AT2G40380.1 )
(BLAST)

001: MSSSPAILPV TNQQAATQSQ PPINSHAFRT FLSRLSSSLR ESLSQRRPWL ELVDRSSFAR PDSLTDSFSR IRKNLAYFKV NYSAIVSLVL AFSLLSHPFS
101: LLVLLSLLGS WMFLYLFRSS DQPLVLFGRS FSDRETLLGL VLTTIVVVFM TSVGSLLTSA LTIGIAIVCL HGAFRVPDDL FLDEQEPANA GLLSFIGNSA
201: ATSAAASVVA GRV

Arabidopsis Description

PRA1B2PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VRS5]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.