Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- peroxisome 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY27245 | Canola | plastid | 99.01 | 99.01 |
| AT3G56110.1 | Thale cress | plastid | 92.12 | 89.47 |
| CDY31997 | Canola | plastid | 92.12 | 89.05 |
| CDX67633 | Canola | plastid | 91.13 | 87.68 |
| CDY05662 | Canola | plastid | 31.03 | 86.3 |
| CDY41253 | Canola | plastid | 35.47 | 83.72 |
| CDY25186 | Canola | plastid | 35.47 | 83.72 |
| CDX74794 | Canola | plastid | 79.8 | 76.06 |
| CDY18870 | Canola | plastid | 77.34 | 75.12 |
| CDX70153 | Canola | plastid | 69.95 | 66.05 |
| Solyc06g050570.1.1 | Tomato | plastid | 68.97 | 64.22 |
| PGSC0003DMT400061546 | Potato | plastid | 68.47 | 63.76 |
| KRH73238 | Soybean | plastid | 67.0 | 63.26 |
| KRH14895 | Soybean | plastid | 67.0 | 63.26 |
| KRH54835 | Soybean | endoplasmic reticulum, extracellular, vacuole | 33.0 | 62.04 |
| CDY63156 | Canola | plastid | 59.61 | 55.5 |
| CDY07736 | Canola | plastid | 60.59 | 55.41 |
| CDX80758 | Canola | plastid | 56.16 | 53.27 |
| CDX81033 | Canola | plastid | 53.69 | 50.0 |
| CDY58876 | Canola | plastid | 53.69 | 50.0 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 39.41 | 43.96 |
| CDY61529 | Canola | plastid | 27.09 | 43.65 |
| CDY33064 | Canola | cytosol, plasma membrane, plastid | 36.45 | 39.57 |
| CDY51735 | Canola | plasma membrane | 34.98 | 39.01 |
| CDY23634 | Canola | plasma membrane | 34.48 | 38.67 |
| CDY24050 | Canola | cytosol, plasma membrane, plastid | 35.47 | 38.5 |
| CDY37483 | Canola | plasma membrane | 34.48 | 38.46 |
| CDX97509 | Canola | plasma membrane | 33.99 | 38.12 |
| CDY26125 | Canola | cytosol, plasma membrane, plastid | 33.99 | 36.51 |
| CDY08228 | Canola | plasma membrane | 32.51 | 34.92 |
| CDX81845 | Canola | plasma membrane | 28.08 | 31.49 |
| CDY43514 | Canola | mitochondrion | 27.09 | 31.43 |
| CDY26225 | Canola | plasma membrane | 27.59 | 30.43 |
| CDY32804 | Canola | plastid | 28.08 | 30.32 |
| CDY06788 | Canola | plastid | 28.57 | 29.9 |
| CDY59501 | Canola | plasma membrane | 26.6 | 29.35 |
| CDY15494 | Canola | plasma membrane | 25.62 | 29.21 |
| CDX86646 | Canola | plasma membrane | 25.62 | 29.21 |
| CDY17405 | Canola | plastid | 27.59 | 29.17 |
| CDY50022 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 26.6 | 29.03 |
| CDY51077 | Canola | cytosol, endoplasmic reticulum, plasma membrane | 26.11 | 28.65 |
| CDX93539 | Canola | plastid | 29.06 | 28.37 |
| CDX95035 | Canola | plastid | 28.08 | 27.4 |
| CDY55133 | Canola | plasma membrane | 24.63 | 23.47 |
| CDY51734 | Canola | plastid | 23.65 | 22.97 |
| CDY37482 | Canola | plastid | 23.65 | 22.97 |
| CDY51733 | Canola | plastid | 23.65 | 22.43 |
Protein Annotations
| EnsemblPlants:CDX72173 | EnsemblPlantsGene:GSBRNA2T00156000001 | GO:A0A078CB01 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF34 |
| PFAM:PF03208 | ProteinID:CDX72173 | ProteinID:CDX72173.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI0004EF1CD9 |
| MapMan:22.8.4.3.2 | : | : | : | : | : |
Description
BnaC08g27010D
Coordinates
chrLK031795:+:2815918..2816777
Molecular Weight (calculated)
22057.0 Da
IEP (calculated)
8.749
GRAVY (calculated)
0.472
Length
203 amino acids
Sequence
(BLAST)
(BLAST)
001: MASPPTIPVT NQQAAQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL VDRSSMARPE SLTDALSRIR KNLAYFKVNY ATIVSLVLAF SLFSHPLSLL
101: VLVGLLAGWM FLYVFRPADQ PLVVFGRTFS DRETLLGLAL CTIVVVFMTS VGSLLTSALM IGVAIVCLHG AFVVPDDLFM DDQEPANAGL LSFLGGSATS
201: GRV
101: VLVGLLAGWM FLYVFRPADQ PLVVFGRTFS DRETLLGLAL CTIVVVFMTS VGSLLTSALM IGVAIVCLHG AFVVPDDLFM DDQEPANAGL LSFLGGSATS
201: GRV
001: MATPPTLPVT NQQAVQSQPP INTPAFRTFF SRLSTSIRDG LSQRRPWTEL IDRSSMARPE SLTDALSRIR KNLAYFKVNY VAIVSLVLAF SLFSHPLSLL
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
101: VLIGLLGGWM FLYLFRPSDQ PLVVFGRTFS DRETLLALVL STIVVVFMTS VGSLLTSALM IGVAIVCVHG AFVVPDDLFL DEQEPANAGL LSFLGGSATS
201: AAAAVSGRV
Arabidopsis Description
PRA1B1PRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A178VNJ7]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.