CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
plastid 7
peroxisome 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
CDX68365
CDX77855
CDX86045
CDX99131
CDY17034
CDY23649
CDY30926
CDY47592
CDY52126
CDY67628
CDY67905
CDY71506

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	CDY17034	AT1G47260.1	21798944
AT2G38360.1	CDY23649	AT1G47260.1	21798944
AT2G38360.1	CDY47592	AT1G47260.1	21798944
AT2G38360.1	CDY67628	AT1G47260.1	21798944
AT2G38360.1	CDX68365	AT3G46060.1	21798944
AT2G38360.1	CDX77855	AT3G46060.1	21798944
AT2G38360.1	CDX86045	AT3G46060.1	21798944
AT2G38360.1	CDX99131	AT3G46060.1	21798944
AT2G38360.1	CDY30926	AT3G46060.1	21798944
AT2G38360.1	CDY71506	AT3G46060.1	21798944
AT2G38360.1	CDY52126	AT5G58750.1	21798944
AT2G38360.1	CDY67905	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY05662	Canola	plastid	30.16	52.05
CDY25186	Canola	plastid	31.75	46.51
CDY41253	Canola	plastid	30.16	44.19
KRG93818	Soybean	extracellular, plasma membrane, vacuole	26.19	39.29
CDY07736	Canola	plastid	69.05	39.19
CDY63156	Canola	plastid	67.46	38.99
AT2G38360.1	Thale cress	plastid	65.87	37.73
PGSC0003DMT400034320	Potato	plastid	48.41	28.77
GSMUA_Achr5P07440_001	Banana	plastid	47.62	27.91
Solyc10g076360.1.1	Tomato	plastid	49.21	27.68
Zm00001d010603_P002	Maize	mitochondrion	47.62	27.65
CDY27245	Canola	plastid	44.44	27.59
Os11t0107600-01	Rice	plastid	47.62	27.27
KXG22202	Sorghum	plastid	46.83	27.19
CDY31997	Canola	plastid	45.24	27.14
CDX80758	Canola	plastid	46.03	27.1
CDX72173	Canola	plastid	43.65	27.09
CDX67633	Canola	plastid	45.24	27.01
GSMUA_Achr3P10010_001	Banana	plastid	46.03	26.85
Os12t0107600-00	Rice	plastid	46.83	26.82
OQU82692	Sorghum	plastid	47.62	26.79
Zm00001d052322_P001	Maize	plastid	39.68	26.45
TraesCS4B01G137300.1	Wheat	plastid	47.62	26.43
Os05t0474400-01	Rice	plasma membrane, vacuole	46.03	26.36
PGSC0003DMT400041063	Potato	plastid	47.62	26.32
CDY18870	Canola	plastid	43.65	26.32
CDX74794	Canola	plastid	44.44	26.29
EES15518	Sorghum	plastid	48.41	26.18
KRH65569	Soybean	plastid	46.83	25.99
TraesCS4D01G132000.1	Wheat	plastid	46.83	25.99
TraesCS4A01G180500.1	Wheat	plastid	46.83	25.88
HORVU4Hr1G024530.1	Barley	plastid	46.03	25.66
KRH76033	Soybean	endoplasmic reticulum	44.44	25.57
Zm00001d043018_P001	Maize	mitochondrion	44.44	25.45
HORVU3Hr1G088130.1	Barley	plastid	43.65	25.0
TraesCS1B01G307400.1	Wheat	golgi, unclear	43.65	25.0
HORVU1Hr1G070360.1	Barley	plastid	43.65	24.77
EES03822	Sorghum	plastid	43.65	24.66
TraesCS3A01G348100.1	Wheat	plastid	41.27	24.53
TraesCS1D01G293300.1	Wheat	plastid	42.86	24.43
TraesCS1A01G297900.1	Wheat	plastid	42.86	24.43
GSMUA_Achr4P18690_001	Banana	plastid	42.06	23.98
TraesCS3D01G341700.1	Wheat	plastid	42.06	23.98
TraesCS3B01G380000.1	Wheat	plastid	40.48	23.94
CDY58876	Canola	plastid	41.27	23.85
CDX70153	Canola	plastid	40.48	23.72
CDX81033	Canola	plastid	40.48	23.39
KRH00333	Soybean	plastid	42.06	23.35
KRH49465	Soybean	plastid	41.27	23.32
KRH32827	Soybean	plastid	41.27	23.01
TraesCS5A01G151600.1	Wheat	plastid	40.48	22.57
TraesCS5B01G150200.1	Wheat	plastid	39.68	22.12
TraesCS5D01G156800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	39.68	22.12
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	31.75	21.98
CDY23634	Canola	plasma membrane	30.95	21.55
GSMUA_Achr10P...	Banana	plastid	30.16	20.88
GSMUA_Achr7P22310_001	Banana	plastid	30.95	20.74
HORVU5Hr1G047520.1	Barley	endoplasmic reticulum, plastid	39.68	20.66
CDX97509	Canola	plasma membrane	29.37	20.44
CDY37483	Canola	plasma membrane	29.37	20.33
CDY51735	Canola	plasma membrane	29.37	20.33
CDY24050	Canola	cytosol, plasma membrane, plastid	30.16	20.32
CDY33064	Canola	cytosol, plasma membrane, plastid	30.16	20.32
CDX86646	Canola	plasma membrane	27.78	19.66
OQU79263	Sorghum	plastid	25.4	19.39
Os01t0827400-01	Rice	extracellular, mitochondrion, plasma membrane	22.22	19.31
GSMUA_Achr5P14320_001	Banana	plastid	28.57	19.25
CDY15494	Canola	plasma membrane	26.98	19.1
CDY50022	Canola	cytosol, endoplasmic reticulum, plasma membrane	27.78	18.82
CDY32804	Canola	plastid	27.78	18.62
CDY26225	Canola	plasma membrane	26.98	18.48
CDX81845	Canola	plasma membrane	26.19	18.23
CDY17405	Canola	plastid	27.78	18.23
CDY08228	Canola	plasma membrane	26.98	17.99
CDY26125	Canola	cytosol, plasma membrane, plastid	26.98	17.99
CDY51077	Canola	cytosol, endoplasmic reticulum, plasma membrane	26.19	17.84
CDX93539	Canola	plastid	29.37	17.79
CDX95035	Canola	plastid	29.37	17.79
CDY59501	Canola	plasma membrane	25.4	17.39
CDY06788	Canola	plastid	24.6	15.98
CDY51733	Canola	plastid	26.98	15.89
CDY37482	Canola	plastid	26.19	15.79
KXG38626	Sorghum	golgi, plasma membrane, plastid	23.02	15.68
CDY43514	Canola	mitochondrion	21.43	15.43
CDY51734	Canola	plastid	25.4	15.31
CDY55133	Canola	plasma membrane	24.6	14.55
HORVU2Hr1G086930.1	Barley	cytosol, plastid	4.76	5.36

Protein Annotations

EnsemblPlants:CDY61529	EnsemblPlantsGene:GSBRNA2T00033991001	GO:A0A078J5A5	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	ProteinID:CDY61529	ProteinID:CDY61529.1
SEG:seg	TMHMM:TMhelix	UniParc:UPI0004EE7814	UniProt:A0A078J5A5	MapMan:35.1	:

Description

BnaC04g53390DPRA1 family protein [Source:UniProtKB/TrEMBL;Acc:A0A078J5A5]

Coordinates

chrLK034008:-:15925..16305

Molecular Weight (calculated)

13833.1 Da

IEP (calculated)

10.117

GRAVY (calculated)

0.465

Length

126 amino acids

Sequence
(BLAST)

001: MASTSPPILP VTSSVESQPP LRAFINQISE TVTTALSTRR PWSELADLST LSKPDSISSA AARIRKNYAY FKVNYLAVAT AIVGFSLVTH PFLLRLPPLS
101: PRVLALPCLA SLWCFLLMLD LFLSRL

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.