Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 5
- peroxisome 1
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | plastid | 84.57 | 87.36 |
| GSMUA_Achr5P14320_001 | Banana | plastid | 78.19 | 78.61 |
| GSMUA_Achr4P18690_001 | Banana | plastid | 74.47 | 63.35 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 65.43 | 56.94 |
| Bra005112.1-P | Field mustard | plastid | 50.0 | 55.95 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 63.3 | 55.35 |
| CDY63156 | Canola | plastid | 62.23 | 53.67 |
| AT2G38360.1 | Thale cress | plastid | 62.23 | 53.18 |
| Bra000056.1-P | Field mustard | plastid | 62.23 | 52.7 |
| CDY07736 | Canola | plastid | 62.23 | 52.7 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 50.53 | 52.2 |
| KRH76033 | Soybean | endoplasmic reticulum | 60.11 | 51.6 |
| KRH65569 | Soybean | plastid | 59.57 | 49.34 |
| Solyc10g076360.1.1 | Tomato | plastid | 56.91 | 47.77 |
| PGSC0003DMT400041063 | Potato | plastid | 56.91 | 46.93 |
| PGSC0003DMT400034320 | Potato | plastid | 52.66 | 46.7 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 29.26 | 46.61 |
| CDX80758 | Canola | plastid | 50.0 | 43.93 |
| KRH49465 | Soybean | plastid | 49.47 | 41.7 |
| AT5G01640.1 | Thale cress | plastid | 49.47 | 41.7 |
| KRH00333 | Soybean | plastid | 48.4 | 40.09 |
| KRH32827 | Soybean | plastid | 46.28 | 38.5 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 15.43 | 34.52 |
| GSMUA_Achr7P07600_001 | Banana | plastid | 34.57 | 31.4 |
| CDY61529 | Canola | plastid | 20.74 | 30.95 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 29.26 | 29.26 |
| GSMUA_AchrUn_... | Banana | plastid | 34.57 | 27.66 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr7P22310_001 | EnsemblPlants:GSMUA_Achr7T22310_001 | EnsemblPlantsGene:GSMUA_Achr7G22310_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF34 | PFAM:PF03208 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI00029695BA | UniProt:M0TJR7 | MapMan:22.8.4.3.2 | : | : | : |
Description
PRA1 family protein B4 [Source:GMGC_GENE;Acc:GSMUA_Achr7G22310_001]
Coordinates
chr7:-:24826923..24827791
Molecular Weight (calculated)
19164.5 Da
IEP (calculated)
5.784
GRAVY (calculated)
0.911
Length
188 amino acids
Sequence
(BLAST)
(BLAST)
001: MMSSAPSPPP LPISDPPSGA ASAGSTAPVS TPAFRLFLSR LSDSNLAYFR VNYAAVVAAI LALSLVTNPF SLLVLLALLA AWCLLYLFRP ADPPLVLFGR
101: TFSDRETLGG LVLFSVLVVF LTSVGSIIIS ALVAGAAMVA AHGAFRVPED LFLDEKETGA ATGLLSFLGG VASSAASAAS PAVVAARV
101: TFSDRETLGG LVLFSVLVVF LTSVGSIIIS ALVAGAAMVA AHGAFRVPED LFLDEKETGA ATGLLSFLGG VASSAASAAS PAVVAARV
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.