Factsheet for Bra000056.1-P

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 9
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra002620.1-P
Bra014069.1-P
Bra019475.1-P
Bra032216.1-P
Bra033830.1-P
Bra038265.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	Bra014069.1-P	AT1G47260.1	21798944
AT2G38360.1	Bra032216.1-P	AT1G47260.1	21798944
AT2G38360.1	Bra019475.1-P	AT3G46060.1	21798944
AT2G38360.1	Bra033830.1-P	AT3G46060.1	21798944
AT2G38360.1	Bra038265.1-P	AT3G46060.1	21798944
AT2G38360.1	Bra002620.1-P	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY07736	Canola	plastid	98.2	98.2
AT2G38360.1	Thale cress	plastid	90.09	90.91
Bra005112.1-P	Field mustard	plastid	59.01	77.98
KRH76033	Soybean	endoplasmic reticulum	63.96	64.84
Solyc10g076360.1.1	Tomato	plastid	64.86	64.29
PGSC0003DMT400041063	Potato	plastid	64.86	63.16
Bra003228.1-P	Field mustard	plastid	59.91	63.03
PGSC0003DMT400034320	Potato	plastid	59.46	62.26
GSMUA_Achr7P22310_001	Banana	plastid	52.7	62.23
KRH65569	Soybean	plastid	63.51	62.11
Bra007216.1-P	Field mustard	plastid	56.31	61.58
GSMUA_Achr4P18690_001	Banana	plastid	61.26	61.54
GSMUA_Achr5P14320_001	Banana	plastid	51.8	61.5
GSMUA_Achr10P...	Banana	plastid	50.0	60.99
KRG93818	Soybean	extracellular, plasma membrane, vacuole	22.07	58.33
Bra017037.1-P	Field mustard	plastid	22.52	58.14
Bra009110.1-P	Field mustard	plastid	56.31	58.14
GSMUA_Achr5P07440_001	Banana	plastid	55.41	57.21
Bra007796.1-P	Field mustard	plastid	22.07	56.98
GSMUA_Achr3P10010_001	Banana	plastid	54.95	56.48
Bra004965.1-P	Field mustard	plastid	53.6	55.87
Zm00001d010603_P002	Maize	mitochondrion	54.05	55.3
KXG22202	Sorghum	plastid	53.15	54.38
Os11t0107600-01	Rice	plastid	53.15	53.64
Os12t0107600-00	Rice	plastid	52.25	52.73
TraesCS4B01G137300.1	Wheat	plastid	53.15	51.98
KRH32827	Soybean	plastid	52.7	51.77
TraesCS1B01G307400.1	Wheat	golgi, unclear	50.9	51.36
HORVU1Hr1G070360.1	Barley	plastid	51.35	51.35
HORVU4Hr1G024530.1	Barley	plastid	52.25	51.33
TraesCS4D01G132000.1	Wheat	plastid	52.25	51.1
Os05t0474400-01	Rice	plasma membrane, vacuole	50.45	50.91
Zm00001d052322_P001	Maize	plastid	43.24	50.79
TraesCS1D01G293300.1	Wheat	plastid	50.45	50.68
KRH49465	Soybean	plastid	50.9	50.67
TraesCS4A01G180500.1	Wheat	plastid	51.8	50.44
TraesCS1A01G297900.1	Wheat	plastid	50.0	50.23
KRH00333	Soybean	plastid	51.35	50.22
OQU82692	Sorghum	plastid	50.45	50.0
HORVU3Hr1G088130.1	Barley	plastid	48.65	49.09
EES15518	Sorghum	plastid	51.35	48.93
TraesCS3A01G348100.1	Wheat	plastid	45.95	48.11
Bra005924.1-P	Field mustard	plastid	46.85	47.71
TraesCS3D01G341700.1	Wheat	plastid	47.3	47.51
TraesCS3B01G380000.1	Wheat	plastid	45.5	47.42
Zm00001d043018_P001	Maize	mitochondrion	46.85	47.27
EES03822	Sorghum	plastid	46.85	46.64
Os01t0827400-01	Rice	extracellular, mitochondrion, plasma membrane	30.18	46.21
TraesCS5B01G150200.1	Wheat	plastid	46.85	46.02
TraesCS5A01G151600.1	Wheat	plastid	46.4	45.58
TraesCS5D01G156800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	46.4	45.58
HORVU2Hr1G086930.1	Barley	cytosol, plastid	22.07	43.75
HORVU5Hr1G047520.1	Barley	endoplasmic reticulum, plastid	45.5	41.74
KXG38626	Sorghum	golgi, plasma membrane, plastid	33.33	40.0
Bra021504.1-P	Field mustard	endoplasmic reticulum, peroxisome, plasma membrane	30.18	36.81
Bra037983.1-P	Field mustard	extracellular, plasma membrane	22.52	35.71
Bra027406.1-P	Field mustard	plasma membrane	27.48	33.7
Bra002833.1-P	Field mustard	plastid	27.48	32.97
Bra025954.1-P	Field mustard	plasma membrane	27.03	32.61
Bra031001.1-P	Field mustard	plasma membrane	26.58	32.6
Bra038009.1-P	Field mustard	cytosol, endoplasmic reticulum, plasma membrane	26.58	31.72
Bra018602.1-P	Field mustard	plastid	29.28	31.25
OQU79263	Sorghum	plastid	22.52	30.3
Bra030561.1-P	Field mustard	plasma membrane	23.42	29.21
Bra014355.1-P	Field mustard	cytosol, plasma membrane, plastid	23.87	28.04
Bra011125.1-P	Field mustard	mitochondrion	22.07	28.0
Bra021503.1-P	Field mustard	plastid	21.62	23.08
Bra021502.1-P	Field mustard	plastid	21.62	22.43

Protein Annotations

EnsemblPlants:Bra000056.1	EnsemblPlants:Bra000056.1-P	EnsemblPlantsGene:Bra000056	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021
InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208	SEG:seg	TMHMM:TMhelix
UniParc:UPI0002540097	UniProt:M4C778	MapMan:22.8.4.3.2	:	:	:

Description

AT2G38360 (E=1e-089) PRA1.B4 | PRA1.B4 (PRENYLATED RAB ACCEPTOR 1.B4)

Coordinates

chrA03:-:9096591..9097259

Molecular Weight (calculated)

23629.6 Da

IEP (calculated)

7.440

GRAVY (calculated)

0.491

Length

222 amino acids

Sequence
(BLAST)

001: MASASPPPLP ISNPQTVPSA AAPSSLESHQ PPIATPAFRA FINRISETVS NGLSQRRPWS ELADRSALSK PESISDAALR IRKNYSYFKV NYLAVATAIV
101: GFSLVTHPFS LAFLLCLLAS WLFLYLFRPS DQPIVVLGRT FSDRETLGCL ILFSIFVVFL TDVGSVLVSA VMVGVALICA HGAFRAPEDL FLDEQEPAAT
201: GFLSFLGGAA SSAAPAVIAA RG

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.