CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 4
extracellular 2
endoplasmic reticulum 1
vacuole 1
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	plastid, secretory
BaCelLo:	plastid
ChloroP:	plastid
MultiLoc:	extracellular
PProwler:	secretory
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plasma membrane

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER89811
EER93195
EES03822
EES15518
EES19450
EES19652
EES19841
KXG22202
KXG31516
KXG33320
KXG38626
OQU79263
OQU82692
OQU84758
OQU88745
OQU92576

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	EER93195	AT3G46060.1	21798944
AT2G38360.1	EES19652	AT3G46060.1	21798944
AT2G38360.1	OQU88745	AT3G46060.1	21798944
AT5G01640.1	EER87703	AT4G25660.1	21798944
AT5G01640.1	EES03822	AT5G01640.1	21798944
AT5G01640.1	EES15518	AT5G01640.1	21798944
AT5G01640.1	KXG22202	AT5G01640.1	21798944
AT5G01640.1	KXG38626	AT5G01640.1	21798944
AT5G01640.1	OQU79263	AT5G01640.1	21798944
AT5G01640.1	OQU82692	AT5G01640.1	21798944
AT5G01640.1	EES19450	AT5G12390.1	21798944
AT5G01640.1	OQU92576	AT5G12390.1	21798944
AT5G01640.1	EER89811	AT5G41600.1	21798944
AT5G01640.1	EES19841	AT5G41600.1	21798944
AT5G01640.1	KXG31516	AT5G41600.1	21798944
AT5G01640.1	KXG33320	AT5G41600.1	21798944
AT5G01640.1	OQU84758	AT5G41600.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os01t0827400-01	Rice	extracellular, mitochondrion, plasma membrane	36.97	42.07
KRG93818	Soybean	extracellular, plasma membrane, vacuole	17.58	34.52
EES03822	Sorghum	plastid	46.06	34.08
TraesCS3A01G348100.1	Wheat	plastid	43.03	33.49
TraesCS3B01G380000.1	Wheat	plastid	43.03	33.33
TraesCS3D01G341700.1	Wheat	plastid	44.24	33.03
HORVU3Hr1G088130.1	Barley	plastid	43.64	32.73
KXG22202	Sorghum	plastid	40.61	30.88
KXG38626	Sorghum	golgi, plasma membrane, plastid	29.09	25.95
GSMUA_Achr3P10010_001	Banana	plastid	33.94	25.93
OQU82692	Sorghum	plastid	34.55	25.45
AT4G00005.1	Thale cress	extracellular, plasma membrane	18.18	25.42
CDY61529	Canola	plastid	19.39	25.4
AT2G38360.1	Thale cress	plastid	33.33	25.0
GSMUA_Achr5P07440_001	Banana	plastid	31.52	24.19
EES15518	Sorghum	plastid	33.94	24.03
CDY63156	Canola	plastid	31.52	23.85
KRH76033	Soybean	endoplasmic reticulum	31.52	23.74
PGSC0003DMT400034320	Potato	plastid	29.7	23.11
KRH00333	Soybean	plastid	31.52	22.91
CDX80758	Canola	plastid	29.7	22.9
KRH49465	Soybean	plastid	30.91	22.87
CDY07736	Canola	plastid	30.3	22.52
Bra000056.1-P	Field mustard	plastid	30.3	22.52
KRH65569	Soybean	plastid	30.91	22.47
PGSC0003DMT400041063	Potato	plastid	29.7	21.49
Solyc10g076360.1.1	Tomato	plastid	29.09	21.43
Bra005112.1-P	Field mustard	plastid	21.82	21.43
AT5G01640.1	Thale cress	plastid	28.48	21.08
EES00126	Sorghum	plastid	24.24	20.83
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	22.42	20.33
OQU77594	Sorghum	plastid	23.03	19.39
KRH32827	Soybean	plastid	26.06	19.03
EER90731	Sorghum	plastid	23.64	17.41
HORVU2Hr1G086930.1	Barley	cytosol, plastid	10.91	16.07
EER93477	Sorghum	plastid	26.67	14.97

Protein Annotations

EnsemblPlants:OQU79263	EnsemblPlantsGene:SORBI_3008G120760	GO:GO:0005575	GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317	PANTHER:PTHR19317:SF12	PFAM:PF03208	ProteinID:OQU79263	ProteinID:OQU79263.1	SEG:seg
TMHMM:TMhelix	UniParc:UPI000B8BA43F	UniProt:A0A1Z5R681	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr8:+:53644740..53647392

Molecular Weight (calculated)

18437.5 Da

IEP (calculated)

9.282

GRAVY (calculated)

0.149

Length

165 amino acids

Sequence
(BLAST)

001: MAHKRSIHDQ SMAKLQLASG WTPSRSGMNQ ALRPLVAAAL RKLRHSLPHL LASAHHYERR NPAAYSGSVA TSRLCRNLGY FRVNYATVVA FSLTALFLAH
101: LFSLLVLLGI LGTWCFLYVF RDCDQPVVLF GQTFTDREME HEPNLLAGLA QHVLPAVTFS EDCMP

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.