Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 6
- plasma membrane 3
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr3P10010_001 | Banana | plastid | 85.12 | 84.72 |
| GSMUA_Achr10P... | Banana | plastid | 53.95 | 63.74 |
| GSMUA_Achr4P18690_001 | Banana | plastid | 65.12 | 63.35 |
| GSMUA_Achr7P22310_001 | Banana | plastid | 55.35 | 63.3 |
| GSMUA_Achr5P14320_001 | Banana | plastid | 54.88 | 63.1 |
| Zm00001d010603_P002 | Maize | mitochondrion | 62.33 | 61.75 |
| Os05t0474400-01 | Rice | plasma membrane, vacuole | 62.79 | 61.36 |
| KXG22202 | Sorghum | plastid | 61.4 | 60.83 |
| Os01t0827400-01 | Rice | extracellular, mitochondrion, plasma membrane | 40.0 | 59.31 |
| HORVU3Hr1G088130.1 | Barley | plastid | 60.47 | 59.09 |
| TraesCS3D01G341700.1 | Wheat | plastid | 60.47 | 58.82 |
| EES03822 | Sorghum | plastid | 60.93 | 58.74 |
| TraesCS1B01G307400.1 | Wheat | golgi, unclear | 59.53 | 58.18 |
| TraesCS3B01G380000.1 | Wheat | plastid | 57.21 | 57.75 |
| Zm00001d043018_P001 | Maize | mitochondrion | 59.07 | 57.73 |
| TraesCS3A01G348100.1 | Wheat | plastid | 56.74 | 57.55 |
| TraesCS1D01G293300.1 | Wheat | plastid | 59.07 | 57.47 |
| Os11t0107600-01 | Rice | plastid | 58.6 | 57.27 |
| HORVU1Hr1G070360.1 | Barley | plastid | 59.07 | 57.21 |
| TraesCS1A01G297900.1 | Wheat | plastid | 58.6 | 57.01 |
| CDX80758 | Canola | plastid | 56.74 | 57.01 |
| OQU82692 | Sorghum | plastid | 59.07 | 56.7 |
| EES15518 | Sorghum | plastid | 61.4 | 56.65 |
| HORVU4Hr1G024530.1 | Barley | plastid | 59.53 | 56.64 |
| CDY63156 | Canola | plastid | 57.21 | 56.42 |
| TraesCS4D01G132000.1 | Wheat | plastid | 59.53 | 56.39 |
| KRH76033 | Soybean | endoplasmic reticulum | 57.21 | 56.16 |
| TraesCS4A01G180500.1 | Wheat | plastid | 59.53 | 56.14 |
| TraesCS4B01G137300.1 | Wheat | plastid | 59.07 | 55.95 |
| Os12t0107600-00 | Rice | plastid | 57.21 | 55.91 |
| CDY07736 | Canola | plastid | 57.21 | 55.41 |
| Bra000056.1-P | Field mustard | plastid | 57.21 | 55.41 |
| Solyc10g076360.1.1 | Tomato | plastid | 57.67 | 55.36 |
| AT2G38360.1 | Thale cress | plastid | 56.28 | 55.0 |
| PGSC0003DMT400041063 | Potato | plastid | 58.14 | 54.82 |
| PGSC0003DMT400034320 | Potato | plastid | 53.95 | 54.72 |
| KRH65569 | Soybean | plastid | 57.21 | 54.19 |
| Zm00001d052322_P001 | Maize | plastid | 47.44 | 53.97 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 20.93 | 53.57 |
| AT5G01640.1 | Thale cress | plastid | 54.42 | 52.47 |
| TraesCS5A01G151600.1 | Wheat | plastid | 53.95 | 51.33 |
| TraesCS5B01G150200.1 | Wheat | plastid | 53.95 | 51.33 |
| TraesCS5D01G156800.1 | Wheat | endoplasmic reticulum, plasma membrane, vacuole | 53.95 | 51.33 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 27.91 | 50.85 |
| KXG38626 | Sorghum | golgi, plasma membrane, plastid | 41.4 | 48.11 |
| CDY61529 | Canola | plastid | 27.91 | 47.62 |
| Bra005112.1-P | Field mustard | plastid | 37.21 | 47.62 |
| KRH49465 | Soybean | plastid | 48.37 | 46.64 |
| HORVU5Hr1G047520.1 | Barley | endoplasmic reticulum, plastid | 52.09 | 46.28 |
| HORVU2Hr1G086930.1 | Barley | cytosol, plastid | 23.72 | 45.54 |
| KRH00333 | Soybean | plastid | 47.91 | 45.37 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 38.14 | 45.05 |
| KRH32827 | Soybean | plastid | 44.65 | 42.48 |
| GSMUA_Achr7P07600_001 | Banana | plastid | 35.35 | 36.72 |
| GSMUA_Achr7P09070_001 | Banana | plastid | 32.09 | 36.7 |
| GSMUA_AchrUn_... | Banana | plastid | 35.81 | 32.77 |
| OQU79263 | Sorghum | plastid | 24.19 | 31.52 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr5P07440_001 | EnsemblPlants:GSMUA_Achr5T07440_001 | EnsemblPlantsGene:GSMUA_Achr5G07440_001 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 |
| InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF34 | PFAM:PF03208 | SEG:seg | TMHMM:TMhelix |
| UniParc:UPI000294C22C | UniProt:M0SWH3 | MapMan:22.8.4.3.2 | : | : | : |
Description
PRA1 family protein B4 [Source:GMGC_GENE;Acc:GSMUA_Achr5G07440_001]
Coordinates
chr5:+:5352248..5353199
Molecular Weight (calculated)
22732.9 Da
IEP (calculated)
10.040
GRAVY (calculated)
0.655
Length
215 amino acids
Sequence
(BLAST)
(BLAST)
001: MASAPPPILP VSTAGGGSAP SSAPPISVPA LRLFLSRLSD SARRSLAHRR PWYELFDRSA FARPDSLSDA ASRLRKNLAY FRVNYLALLA AALALSLLSH
101: PFSLLLLVAL LAAWAFLYLF RPSDAPPLIL FHRSFSDREI LAGLVLVTLL VVFLTSVGSL IVSALMVGAA VVCVHGALRV PEDLFLDDQD PGVPASGFLS
201: FLGGAAASSG PSVRI
101: PFSLLLLVAL LAAWAFLYLF RPSDAPPLIL FHRSFSDREI LAGLVLVTLL VVFLTSVGSL IVSALMVGAA VVCVHGALRV PEDLFLDDQD PGVPASGFLS
201: FLGGAAASSG PSVRI
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
SUBAcon: [plastid]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.