Subcellular Localization
min:
: max
Winner_takes_all: plastid
Predictor Summary:
Predictor Summary:
- plastid 4
- cytosol 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 2
- plasma membrane 2
- golgi 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS3A01G348100.1 | Wheat | plastid | 96.71 | 97.17 |
| TraesCS3D01G341700.1 | Wheat | plastid | 97.65 | 94.12 |
| HORVU3Hr1G088130.1 | Barley | plastid | 96.24 | 93.18 |
| Os01t0827400-01 | Rice | extracellular, mitochondrion, plasma membrane | 60.09 | 88.28 |
| Zm00001d043018_P001 | Maize | mitochondrion | 85.45 | 82.73 |
| EES03822 | Sorghum | plastid | 86.39 | 82.51 |
| HORVU2Hr1G086930.1 | Barley | cytosol, plastid | 42.25 | 80.36 |
| TraesCS1B01G307400.1 | Wheat | golgi, unclear | 74.18 | 71.82 |
| GSMUA_Achr3P10010_001 | Banana | plastid | 58.69 | 57.87 |
| GSMUA_Achr5P07440_001 | Banana | plastid | 57.75 | 57.21 |
| TraesCS4B01G137300.1 | Wheat | plastid | 56.34 | 52.86 |
| TraesCS5B01G150200.1 | Wheat | plastid | 53.05 | 50.0 |
| CDX80758 | Canola | plastid | 47.42 | 47.2 |
| PGSC0003DMT400034320 | Potato | plastid | 46.95 | 47.17 |
| KRG93818 | Soybean | extracellular, plasma membrane, vacuole | 18.31 | 46.43 |
| CDY07736 | Canola | plastid | 48.36 | 46.4 |
| CDY63156 | Canola | plastid | 47.42 | 46.33 |
| KRH76033 | Soybean | endoplasmic reticulum | 46.95 | 45.66 |
| Solyc10g076360.1.1 | Tomato | plastid | 47.89 | 45.54 |
| Bra000056.1-P | Field mustard | plastid | 47.42 | 45.5 |
| AT2G38360.1 | Thale cress | plastid | 46.48 | 45.0 |
| PGSC0003DMT400041063 | Potato | plastid | 47.42 | 44.3 |
| KRH65569 | Soybean | plastid | 46.95 | 44.05 |
| KRH49465 | Soybean | plastid | 46.01 | 43.95 |
| OQU79263 | Sorghum | plastid | 33.33 | 43.03 |
| KRH00333 | Soybean | plastid | 45.54 | 42.73 |
| AT5G01640.1 | Thale cress | plastid | 43.66 | 41.7 |
| AT4G00005.1 | Thale cress | extracellular, plasma membrane | 23.0 | 41.53 |
| CDY61529 | Canola | plastid | 23.94 | 40.48 |
| Bra005112.1-P | Field mustard | plastid | 30.99 | 39.29 |
| KRH32827 | Soybean | plastid | 39.91 | 37.61 |
| CDY54457 | Canola | endoplasmic reticulum, peroxisome, plasma membrane | 31.46 | 36.81 |
| TraesCS5B01G385000.1 | Wheat | extracellular, plasma membrane | 23.0 | 34.27 |
| TraesCS3B01G122600.1 | Wheat | plastid | 30.52 | 34.21 |
| TraesCS1B01G143000.1 | Wheat | plastid | 30.52 | 33.85 |
| TraesCS5B01G447900.1 | Wheat | plastid | 30.52 | 28.02 |
Protein Annotations
| EnsemblPlants:TraesCS3B01G380000.1 | EnsemblPlantsGene:TraesCS3B01G380000 | InterPro:Prenylated_rab_accept_PRA1 | PANTHER:PTHR19317 | PANTHER:PTHR19317:SF12 | PFAM:PF03208 |
| SEG:seg | TMHMM:TMhelix | MapMan:22.8.4.3.2 | : | : | : |
Description
No Description!
Coordinates
chr3B:-:597573664..597574305
Molecular Weight (calculated)
22645.4 Da
IEP (calculated)
9.221
GRAVY (calculated)
0.476
Length
213 amino acids
Sequence
(BLAST)
(BLAST)
001: MAAAPTPQPL LPVTNPSAGG GGLTDSALAT PAFQLFLSRF SDTARRSLAD RRPWTELIDR SAISRPDSLS EATSRLRRNL GYFRVNYAAV VAFSLAASLL
101: AHPFSLLVLL SILGAWCFLY VFRAPDQPVV LFGRTFTDRE TLLGLVVSSL LAFFLTSVAS LIISGLLVGG ALVAVHGAFR MPEDLFLDDS SSVSSGNTSH
201: RLLSFLASPG SGV
101: AHPFSLLVLL SILGAWCFLY VFRAPDQPVV LFGRTFTDRE TLLGLVVSSL LAFFLTSVAS LIISGLLVGG ALVAVHGAFR MPEDLFLDDS SSVSSGNTSH
201: RLLSFLASPG SGV
001: MLRCRERSMV RVITRDHDVN TGNRLLQKKS IHSYGPLIHA PSSHPHAQSC VMMANPPTLP ISDHSGGGSQ SQQPVSTPAF RTFLSRLSSS IRQSLSQRRP
101: WLELVDRSAI SRPESLTDAY SRIRRNLPYF KVNYVTIVSL VLALSLLSHP FSLLVLLCLF CAWIFLYLFR PSDQPLVVLG RTFSDRETLG VLVILTIVVV
201: FLTSVGSLLT SALMIGFGIV CLHGAFRVPE DLFLDDQEPA NTGLLSFLSG AATSAAVAAA STPASGRV
101: WLELVDRSAI SRPESLTDAY SRIRRNLPYF KVNYVTIVSL VLALSLLSHP FSLLVLLCLF CAWIFLYLFR PSDQPLVVLG RTFSDRETLG VLVILTIVVV
201: FLTSVGSLLT SALMIGFGIV CLHGAFRVPE DLFLDDQEPA NTGLLSFLSG AATSAAVAAA STPASGRV
Arabidopsis Description
PRA1.B3prenylated RAB acceptor 1.B3 [Source:TAIR;Acc:AT5G05380]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.