CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, extracellular, vacuole

Predictor Summary:

plastid 1
extracellular 2
endoplasmic reticulum 1
vacuole 2
plasma membrane 2
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular, plasma membrane, vacuole
Any Predictor:	secretory
BaCelLo:	plastid
MultiLoc:	extracellular
PProwler:	secretory
WoLF PSORT:	plasma membrane
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG93818
KRG98294
KRH00333
KRH08874
KRH10292
KRH14565
KRH14895
KRH23030
KRH24835
KRH29838
KRH30354
KRH32827
KRH35244
KRH38387
KRH41254
KRH49465
KRH54835
KRH59988
KRH65569
KRH73238
KRH73559
KRH76033

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G38360.1	KRH10292	AT3G46060.1	21798944
AT2G38360.1	KRH23030	AT3G46060.1	21798944
AT2G38360.1	KRH24835	AT3G46060.1	21798944
AT2G38360.1	KRH29838	AT3G46060.1	21798944
AT2G38360.1	KRG98294	AT5G58750.1	21798944
AT2G38360.1	KRH30354	AT5G58750.1	21798944
AT5G01640.1	KRH14895	AT2G40380.1	21798944
AT5G01640.1	KRH54835	AT2G40380.1	21798944
AT5G01640.1	KRH73238	AT2G40380.1	21798944
AT5G01640.1	KRH08874	AT4G25660.1	21798944
AT5G01640.1	KRH35244	AT4G25660.1	21798944
AT5G01640.1	KRH38387	AT4G25660.1	21798944
AT5G01640.1	KRG93818	AT5G01640.1	21798944
AT5G01640.1	KRH00333	AT5G01640.1	21798944
AT5G01640.1	KRH32827	AT5G01640.1	21798944
AT5G01640.1	KRH49465	AT5G01640.1	21798944
AT5G01640.1	KRH65569	AT5G01640.1	21798944
AT5G01640.1	KRH76033	AT5G01640.1	21798944
AT5G01640.1	KRH14565	AT5G12390.1	21798944
AT5G01640.1	KRH73559	AT5G12390.1	21798944
AT5G01640.1	KRH41254	AT5G41600.1	21798944
AT5G01640.1	KRH59988	AT5G41600.1	21798944
AT5G01640.1	KRG98294	AT5G58750.1	21798944
AT5G01640.1	KRH30354	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH76033	Soybean	endoplasmic reticulum	82.14	31.51
KRH65569	Soybean	plastid	83.33	30.84
KRH32827	Soybean	plastid	78.57	29.2
AT4G00005.1	Thale cress	extracellular, plasma membrane	39.29	27.97
CDY61529	Canola	plastid	39.29	26.19
PGSC0003DMT400034320	Potato	plastid	61.9	24.53
KRH00333	Soybean	plastid	65.48	24.23
CDX80758	Canola	plastid	60.71	23.83
KRH49465	Soybean	plastid	63.1	23.77
Solyc10g076360.1.1	Tomato	plastid	60.71	22.77
AT5G01640.1	Thale cress	plastid	59.52	22.42
PGSC0003DMT400041063	Potato	plastid	60.71	22.37
Bra000056.1-P	Field mustard	plastid	58.33	22.07
CDY07736	Canola	plastid	57.14	21.62
CDY63156	Canola	plastid	55.95	21.56
KRH04803	Soybean	plastid	25.0	21.43
KRH73238	Soybean	plastid	54.76	21.4
Zm00001d010603_P002	Maize	mitochondrion	54.76	21.2
GSMUA_Achr5P07440_001	Banana	plastid	53.57	20.93
GSMUA_Achr4P18690_001	Banana	plastid	54.76	20.81
KXG22202	Sorghum	plastid	53.57	20.74
KRH14895	Soybean	plastid	52.38	20.47
AT2G38360.1	Thale cress	plastid	53.57	20.45
KRH54835	Soybean	endoplasmic reticulum, extracellular, vacuole	26.19	20.37
Os05t0474400-01	Rice	plasma membrane, vacuole	52.38	20.0
GSMUA_Achr3P10010_001	Banana	plastid	50.0	19.44
Os01t0827400-01	Rice	extracellular, mitochondrion, plasma membrane	33.33	19.31
TraesCS1B01G307400.1	Wheat	golgi, unclear	50.0	19.09
Os12t0107600-00	Rice	plastid	50.0	19.09
Os11t0107600-01	Rice	plastid	50.0	19.09
TraesCS1A01G297900.1	Wheat	plastid	50.0	19.0
TraesCS1D01G293300.1	Wheat	plastid	50.0	19.0
HORVU1Hr1G070360.1	Barley	plastid	50.0	18.92
KRH44167	Soybean	plasma membrane	39.29	18.75
TraesCS4B01G137300.1	Wheat	plastid	50.0	18.5
TraesCS4D01G132000.1	Wheat	plastid	50.0	18.5
TraesCS4A01G180500.1	Wheat	plastid	50.0	18.42
TraesCS3B01G380000.1	Wheat	plastid	46.43	18.31
HORVU4Hr1G024530.1	Barley	plastid	48.81	18.14
TraesCS3D01G341700.1	Wheat	plastid	47.62	18.1
KRH71325	Soybean	plastid	38.1	18.08
KRH47141	Soybean	plasma membrane	38.1	17.98
EES03822	Sorghum	plastid	47.62	17.94
KRH10001	Soybean	mitochondrion	39.29	17.93
KRH23330	Soybean	plastid	39.29	17.93
TraesCS3A01G348100.1	Wheat	plastid	45.24	17.92
Zm00001d043018_P001	Maize	mitochondrion	46.43	17.73
HORVU3Hr1G088130.1	Barley	plastid	46.43	17.73
OQU79263	Sorghum	plastid	34.52	17.58
OQU82692	Sorghum	plastid	46.43	17.41
KRH32112	Soybean	plastid	36.9	16.85
TraesCS5A01G151600.1	Wheat	plastid	45.24	16.81
EES15518	Sorghum	plastid	46.43	16.74
KRH34380	Soybean	cytosol, plastid	33.33	16.57
GSMUA_Achr10P...	Banana	plastid	35.71	16.48
TraesCS5B01G150200.1	Wheat	plastid	44.05	16.37
TraesCS5D01G156800.1	Wheat	endoplasmic reticulum, plasma membrane, vacuole	44.05	16.37
GSMUA_Achr5P14320_001	Banana	plastid	35.71	16.04
HORVU5Hr1G047520.1	Barley	endoplasmic reticulum, plastid	45.24	15.7
KXG38626	Sorghum	golgi, plasma membrane, plastid	34.52	15.68
KRG92690	Soybean	plastid	35.71	15.62
KRH74153	Soybean	endoplasmic reticulum, peroxisome, plasma membrane	36.9	15.5
GSMUA_Achr7P22310_001	Banana	plastid	34.52	15.43
KRH67312	Soybean	plastid	36.9	15.42
KRH49060	Soybean	plasma membrane	35.71	15.15
Bra005112.1-P	Field mustard	plastid	29.76	14.88
KRH34097	Soybean	plastid	33.33	14.74
KRG95630	Soybean	plastid	34.52	14.5
Zm00001d052322_P001	Maize	plastid	32.14	14.29
CDY54457	Canola	endoplasmic reticulum, peroxisome, plasma membrane	28.57	13.19
HORVU2Hr1G086930.1	Barley	cytosol, plastid	5.95	4.46

Protein Annotations

EMBL:ACUP02011630	EnsemblPlants:KRG93818	EnsemblPlantsGene:GLYMA_19G043500	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150
GO:GO:0016020	GO:GO:0016021	InterPro:Prenylated_rab_accept_PRA1	PANTHER:PTHR19317	PANTHER:PTHR19317:SF34	PFAM:PF03208
ProteinID:KRG93818	ProteinID:KRG93818.1	TMHMM:TMhelix	UniParc:UPI0006EDF2E5	UniProt:A0A0R0EU57	MapMan:35.1

Description

hypothetical protein

Coordinates

chr19:+:6400220..6402401

Molecular Weight (calculated)

9883.1 Da

IEP (calculated)

10.687

GRAVY (calculated)

0.333

Length

84 amino acids

Sequence
(BLAST)

1: MRRPWSELAD RSTFSKLESF SKATLRVHKN FSYFRIKYYV VVSLILAVSF LTNPFSLILL VGLFASWTFL YLFRPSNQPL INLD

Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)

001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV

Arabidopsis Description

PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.