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Sorghum
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Sorghum
Subcellular Localization
min:
: max

 
Winner_takes_all: plastid

Predictor Summary:
  • nucleus 1
  • plastid 6
  • peroxisome 1
  • plasma membrane 1
Predictors GFP MS/MS Papers
Winner Takes All:plastid
Any Predictor:nucleus, peroxisome, plasma membrane, plastid
BaCelLo:nucleus
ChloroP:plastid
iPSORT:plastid
MultiLoc:peroxisome
Predotar:plastid
PProwler:plastid
TargetP:plastid
WoLF PSORT:plasma membrane
YLoc:plastid
PPI

Inferred distinct locusB in Crop

locusBlocations
EER87703
EER89811
EER93195
EES03822
EES15518
EES19450
EES19652
EES19841
KXG22202
KXG31516
KXG33320
KXG38626
OQU79263
OQU82692
OQU84758
OQU88745
OQU92576

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT2G38360.1 EER93195 AT3G46060.1 21798944
AT2G38360.1 EES19652 AT3G46060.1 21798944
AT2G38360.1 OQU88745 AT3G46060.1 21798944
AT5G01640.1 EER87703 AT4G25660.1 21798944
AT5G01640.1 EES03822 AT5G01640.1 21798944
AT5G01640.1 EES15518 AT5G01640.1 21798944
AT5G01640.1 KXG22202 AT5G01640.1 21798944
AT5G01640.1 KXG38626 AT5G01640.1 21798944
AT5G01640.1 OQU79263 AT5G01640.1 21798944
AT5G01640.1 OQU82692 AT5G01640.1 21798944
AT5G01640.1 EES19450 AT5G12390.1 21798944
AT5G01640.1 OQU92576 AT5G12390.1 21798944
AT5G01640.1 EER89811 AT5G41600.1 21798944
AT5G01640.1 EES19841 AT5G41600.1 21798944
AT5G01640.1 KXG31516 AT5G41600.1 21798944
AT5G01640.1 KXG33320 AT5G41600.1 21798944
AT5G01640.1 OQU84758 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
EES15518 Sorghum plastid 96.43 92.7
Zm00001d052322_P001 Maize plastid 76.34 90.48
Os11t0107600-01 Rice plastid 79.91 81.36
Os12t0107600-00 Rice plastid 77.68 79.09
TraesCS4D01G132000.1 Wheat plastid 74.55 73.57
HORVU4Hr1G024530.1 Barley plastid 74.11 73.45
TraesCS4A01G180500.1 Wheat plastid 74.11 72.81
TraesCS4B01G137300.1 Wheat plastid 73.21 72.25
KXG38626 Sorghum golgi, plasma membrane, plastid 56.7 68.65
TraesCS5D01G156800.1 Wheat endoplasmic reticulum, plasma membrane, vacuole 68.3 67.7
TraesCS5A01G151600.1 Wheat plastid 68.3 67.7
TraesCS5B01G150200.1 Wheat plastid 67.41 66.81
HORVU5Hr1G047520.1 Barley endoplasmic reticulum, plastid 66.07 61.16
GSMUA_Achr3P10010_001 Banana plastid 58.04 60.19
GSMUA_Achr5P07440_001 Banana plastid 56.7 59.07
KXG22202 Sorghum plastid 57.14 58.99
EES03822 Sorghum plastid 55.36 55.61
CDY07736 Canola plastid 50.45 50.9
KRH76033 Soybean endoplasmic reticulum 49.55 50.68
CDY63156 Canola plastid 49.11 50.46
Bra000056.1-P Field mustard plastid 50.0 50.45
KRH65569 Soybean plastid 50.0 49.34
CDX80758 Canola plastid 46.43 48.6
AT2G38360.1 Thale cress plastid 47.32 48.18
CDY61529 Canola plastid 26.79 47.62
Solyc10g076360.1.1 Tomato plastid 46.88 46.88
KRG93818 Soybean extracellular, plasma membrane, vacuole 17.41 46.43
Bra005112.1-P Field mustard plastid 34.82 46.43
AT5G01640.1 Thale cress plastid 45.54 45.74
PGSC0003DMT400034320 Potato plastid 42.86 45.28
PGSC0003DMT400041063 Potato plastid 45.98 45.18
KRH00333 Soybean plastid 45.09 44.49
AT4G00005.1 Thale cress extracellular, plasma membrane 23.21 44.07
KRH49465 Soybean plastid 43.75 43.95
CDY54457 Canola endoplasmic reticulum, peroxisome, plasma membrane 35.27 43.41
KRH32827 Soybean plastid 39.29 38.94
EES00126 Sorghum plastid 29.91 34.9
OQU79263 Sorghum plastid 25.45 34.55
OQU77594 Sorghum plastid 28.57 32.65
EER90731 Sorghum plastid 31.7 31.7
EER93477 Sorghum plastid 34.82 26.53
Protein Annotations
EnsemblPlants:OQU82692EnsemblPlantsGene:SORBI_3005G005600GO:GO:0005575GO:GO:0016020GO:GO:0016021InterPro:Prenylated_rab_accept_PRA1
PANTHER:PTHR19317PANTHER:PTHR19317:SF35PFAM:PF03208ProteinID:OQU82692ProteinID:OQU82692.1SEG:seg
TMHMM:TMhelixUniParc:UPI000B425F01UniProt:A0A1Z5RG15MapMan:22.8.4.3.2::
Description
hypothetical protein
Coordinates
chr5:+:431831..433046
Molecular Weight (calculated)
22714.3 Da
IEP (calculated)
7.943
GRAVY (calculated)
0.600
Length
224 amino acids
Sequence
(BLAST)
001: MAAASPPLLP TTVVPAAAPS PAPTSLSSAD AAADATTNPA AIRAFLSRLL DSTRRALSGA RPWSELADRS ALSRPDTLAE ATSRLRKNLA YFRVNYAAVA
101: ALCLAASLLA HPFSLAALLA LLAAWCLLYV LRPADAPPVA AFGRTFSDRE VLGGLVAASA FVVFLTSVGS LIFSALALGA AVVCAHGACR VPEDLFLDEA
201: DQAAGGAAGN PLLSFIASAT GGRV
Best Arabidopsis Sequence Match ( AT2G38360.1 )
(BLAST)
001: MASSAPPVLP ISNPQTVPSA APSSVESQPP IATPAFRNFI NQITETVKNG LSKRRPWAEL ADRSALSKPE SISDAAVRIR KNYSYFKVNY LTVATAIVGF
101: SLVTHPFSLV FLLCLLASWL FLYLFRPTDQ PIVLFGRTFS DRETLGCLIL FSIFVIFLTD VGSVLVSAMM IGVALICAHG AFRAPEDLFL DEQEPAATGF
201: LSFLGGAASS AAPAVIAARV
Arabidopsis Description
PRA1B4PRA1 family protein B4 [Source:UniProtKB/Swiss-Prot;Acc:O80915]
SUBAcon: [plastid]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.