CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EES00126
EES04830	peroxisome
KXG32246
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G46060.1	EES04830	AT1G29260.1	23297417
AT3G46060.1	KXG32246	AT3G06540.1	21798944
AT3G46060.1	EES00126	AT3G13720.1	21798944
AT3G46060.1	OQU77594	AT3G13720.1	21798944
AT3G46060.1	EER87703	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY72056	Canola	cytosol	53.1	96.0
Solyc06g005350.2.1	Tomato	cytosol	60.62	95.14
Os07t0239400-01	Rice	plasma membrane	90.27	94.88
EER93195	Sorghum	cytosol	89.38	94.39
EES19652	Sorghum	cytosol	89.38	93.95
GSMUA_Achr10P...	Banana	cytosol	88.05	92.13
PGSC0003DMT400040138	Potato	cytosol	88.05	92.13
GSMUA_Achr9P03220_001	Banana	cytosol	88.05	92.13
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	88.05	92.13
GSMUA_Achr11P...	Banana	cytosol	88.05	92.13
GSMUA_AchrUn_...	Banana	cytosol	87.61	91.67
Solyc09g010370.2.1	Tomato	extracellular, plastid	87.61	91.67
PGSC0003DMT400049296	Potato	cytosol	87.61	91.67
PGSC0003DMT400022823	Potato	cytosol	87.61	91.67
KRH29838	Soybean	endoplasmic reticulum	86.73	91.59
GSMUA_Achr6P34270_001	Banana	cytosol	87.17	91.2
VIT_13s0019g00520.t01	Wine grape	extracellular	87.17	91.2
VIT_08s0040g02490.t01	Wine grape	cytosol	87.17	91.2
KRH24835	Soybean	cytosol	86.28	91.12
KRH70501	Soybean	endoplasmic reticulum	86.73	90.74
KRH01606	Soybean	endoplasmic reticulum	86.73	90.74
VIT_06s0004g04200.t01	Wine grape	cytosol	86.28	90.28
GSMUA_Achr8P02620_001	Banana	cytosol	86.28	90.28
PGSC0003DMT400071317	Potato	cytosol	86.28	90.28
Solyc04g011360.2.1	Tomato	plastid	85.84	89.81
GSMUA_Achr10P...	Banana	cytosol	85.84	89.81
Bra019475.1-P	Field mustard	cytosol	85.84	89.81
Solyc10g086350.1.1	Tomato	cytosol, nucleus	85.84	89.81
PGSC0003DMT400008917	Potato	cytosol	85.4	89.35
CDX86045	Canola	cytosol	85.4	89.35
CDY30926	Canola	cytosol	85.4	89.35
KRH36193	Soybean	endoplasmic reticulum, extracellular	85.4	89.35
AT5G59840.1	Thale cress	cytosol	85.4	89.35
KRG90563	Soybean	cytosol	84.96	88.89
KRH10292	Soybean	cytosol	84.51	88.84
KRH23030	Soybean	endoplasmic reticulum	84.51	88.84
AT3G53610.3	Thale cress	cytosol	84.51	88.43
AT3G46060.1	Thale cress	cytosol	84.51	88.43
CDX68365	Canola	cytosol	84.51	88.43
CDX77855	Canola	cytosol	84.51	88.43
CDY71506	Canola	cytosol	84.51	88.43
Bra002527.1-P	Field mustard	cytosol	84.07	87.96
CDY31592	Canola	cytosol	84.07	87.96
Bra006690.1-P	Field mustard	cytosol	84.07	87.96
CDX88725	Canola	cytosol	83.63	87.5
CDX88726	Canola	cytosol	83.63	87.5
Bra033830.1-P	Field mustard	cytosol	74.34	87.05
CDX80224	Canola	cytosol	81.42	86.39
Bra020282.1-P	Field mustard	cytosol	81.42	85.19
CDY09249	Canola	cytosol	80.97	84.72
EER98157	Sorghum	cytosol	76.99	80.56
CDY34032	Canola	cytosol	50.0	76.87
CDY70243	Canola	cytosol	49.56	73.68
CDY07577	Canola	cytosol	84.96	71.91
CDY52746	Canola	cytosol	84.51	71.0
Bra003149.1-P	Field mustard	cytosol	84.51	71.0
CDX94925	Canola	cytosol	50.44	69.51
CDX99131	Canola	cytosol	85.84	62.99
EES07529	Sorghum	cytosol	55.75	62.07
EES03124	Sorghum	cytosol	54.42	60.59
EES18842	Sorghum	cytosol	52.21	57.56
EES10859	Sorghum	cytosol	48.23	52.66
Bra038265.1-P	Field mustard	cytosol	85.4	51.33
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	38.94	41.9
EES05332	Sorghum	cytosol	38.5	41.43

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	UniProt:A0A1W0W317	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlants:OQU88745	ProteinID:OQU88745
ProteinID:OQU88745.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF646	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3002G084300
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0009DC92D1	SEG:seg

Description

hypothetical protein

Coordinates

chr2:-:9002467..9007970

Molecular Weight (calculated)

25149.8 Da

IEP (calculated)

7.939

GRAVY (calculated)

-0.379

Length

226 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGQMASC YREHVHGVGK SCLLLRFSDG SFTTSFITTI GIDFKIRTVE LDGKRIKLQI WDTAGQERFR TITTAYYRGA
101: MGILLVYDVT DESSFNNIRN WIRNIEQHAS DNVNKILVGN KADMDESKRA VPTSKGQALA DEYGIKFFET SAKTNLNVEQ VFFSIARDIK QRLAESDSKP
201: EDRTISINRP EGGEASASQK SACCGS

Best Arabidopsis Sequence Match ( AT5G59840.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP KSKGQALADE YGIKFFETSA KTNLNVEEVF FSIAKDIKQR LADTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGS

Arabidopsis Description

Putative GTP-binding protein ara-3 [Source:UniProtKB/TrEMBL;Acc:Q9FJF1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.