Factsheet for PGSC0003DMT400071317

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g011360.2.1	Tomato	plastid	99.54	99.54
PGSC0003DMT400022823	Potato	cytosol	93.98	93.98
VIT_13s0019g00520.t01	Wine grape	extracellular	93.98	93.98
KRH70501	Soybean	endoplasmic reticulum	93.06	93.06
KRH01606	Soybean	endoplasmic reticulum	92.59	92.59
KRH36193	Soybean	endoplasmic reticulum, extracellular	92.13	92.13
PGSC0003DMT400049296	Potato	cytosol	91.67	91.67
KRG90563	Soybean	cytosol	91.67	91.67
Os03t0819900-01	Rice	plasma membrane	90.28	91.12
PGSC0003DMT400008917	Potato	cytosol	90.74	90.74
GSMUA_Achr11P...	Banana	cytosol	90.74	90.74
PGSC0003DMT400040138	Potato	cytosol	90.74	90.74
Os07t0239400-01	Rice	plasma membrane	90.28	90.7
GSMUA_AchrUn_...	Banana	cytosol	90.28	90.28
GSMUA_Achr9P03220_001	Banana	cytosol	90.28	90.28
GSMUA_Achr10P...	Banana	cytosol	90.28	90.28
Zm00001d010538_P005	Maize	cytosol	89.81	90.23
Zm00001d034638_P001	Maize	cytosol	89.81	90.23
Zm00001d038380_P001	Maize	extracellular, plasma membrane	89.81	90.23
EES19652	Sorghum	cytosol	89.81	90.23
EER93195	Sorghum	cytosol	89.35	90.19
GSMUA_Achr10P...	Banana	cytosol	89.81	89.81
GSMUA_Achr6P34270_001	Banana	cytosol	89.81	89.81
Os05t0461300-01	Rice	plastid	89.81	89.81
TraesCS1A01G286200.1	Wheat	cytosol	88.43	89.25
TraesCS1D01G285200.1	Wheat	cytosol	88.43	89.25
TraesCS1B01G295600.1	Wheat	cytosol	88.43	89.25
TraesCS3A01G356000.3	Wheat	plastid	88.89	88.89
GSMUA_Achr8P02620_001	Banana	cytosol	88.89	88.89
TraesCS3B01G388900.1	Wheat	cytosol	88.43	88.43
TraesCS5A01G476400.1	Wheat	cytosol	87.5	88.32
TraesCS5B01G489300.1	Wheat	golgi	87.04	87.85
TraesCS5D01G489700.1	Wheat	cytosol	87.04	87.85
OQU88745	Sorghum	cytosol	90.28	86.28
HORVU1Hr1G072070.1	Barley	cytosol	85.65	82.22
TraesCS3D01G350000.3	Wheat	cytosol	88.43	80.25
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	81.02	67.57
HORVU3Hr1G086830.7	Barley	cytosol	75.46	61.51
PGSC0003DMT400067463	Potato	cytosol	57.41	61.08
PGSC0003DMT400034028	Potato	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole	57.41	61.08
PGSC0003DMT400041326	Potato	cytosol	55.56	59.11
PGSC0003DMT400064019	Potato	cytosol, extracellular	53.7	57.43
PGSC0003DMT400020113	Potato	cytosol	41.67	42.65
PGSC0003DMT400032908	Potato	cytosol	41.67	42.65
PGSC0003DMT400079822	Potato	cytosol	41.67	42.65
PGSC0003DMT400054721	Potato	cytosol	30.09	39.39

Protein Annotations

EntrezGene:102591326	MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1CNI9	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400027738	PGSC:PGSC0003DMG400027738	EnsemblPlants:PGSC0003DMT400071317	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF829	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002969622
RefSeq:XP_006365714.1	RefSeq:XP_006365715.1	SEG:seg	:	:	:

Description

GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400027738]

Coordinates

chr4:-:6978432..6983264

Molecular Weight (calculated)

23912.3 Da

IEP (calculated)

8.021

GRAVY (calculated)

-0.377

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEEVF FSIGKDIKQR LSESDSKTEP QTIRINQSDQ
201: AGTAGQGAQK SSCCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.