Factsheet for Solyc04g011360.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1
extracellular 1
golgi 1
plasma membrane 1
endoplasmic reticulum 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

plastid: 22908117
plastid: 26371478
unclear: 26455813
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400071317	Potato	cytosol	99.54	99.54
Solyc06g005350.2.1	Tomato	cytosol	63.89	95.83
VIT_13s0019g00520.t01	Wine grape	extracellular	93.52	93.52
Solyc09g010370.2.1	Tomato	extracellular, plastid	93.52	93.52
KRH70501	Soybean	endoplasmic reticulum	92.59	92.59
KRH01606	Soybean	endoplasmic reticulum	92.13	92.13
KRH36193	Soybean	endoplasmic reticulum, extracellular	91.67	91.67
KRG90563	Soybean	cytosol	91.2	91.2
Os03t0819900-01	Rice	plasma membrane	89.81	90.65
GSMUA_Achr11P...	Banana	cytosol	90.28	90.28
Solyc10g086350.1.1	Tomato	cytosol, nucleus	90.28	90.28
EES19652	Sorghum	cytosol	89.81	90.23
Zm00001d038380_P001	Maize	extracellular, plasma membrane	89.81	90.23
Zm00001d010538_P005	Maize	cytosol	89.81	90.23
Os07t0239400-01	Rice	plasma membrane	89.81	90.23
GSMUA_Achr10P...	Banana	cytosol	89.81	89.81
GSMUA_AchrUn_...	Banana	cytosol	89.81	89.81
GSMUA_Achr10P...	Banana	cytosol	89.81	89.81
GSMUA_Achr9P03220_001	Banana	cytosol	89.81	89.81
Zm00001d034638_P001	Maize	cytosol	89.35	89.77
EER93195	Sorghum	cytosol	88.89	89.72
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	89.35	89.35
GSMUA_Achr6P34270_001	Banana	cytosol	89.35	89.35
Os05t0461300-01	Rice	plastid	89.35	89.35
TraesCS1D01G285200.1	Wheat	cytosol	87.96	88.78
TraesCS1B01G295600.1	Wheat	cytosol	87.96	88.78
TraesCS1A01G286200.1	Wheat	cytosol	87.96	88.78
TraesCS3A01G356000.3	Wheat	plastid	88.43	88.43
GSMUA_Achr8P02620_001	Banana	cytosol	88.43	88.43
TraesCS3B01G388900.1	Wheat	cytosol	87.96	87.96
TraesCS5A01G476400.1	Wheat	cytosol	87.04	87.85
TraesCS5B01G489300.1	Wheat	golgi	86.57	87.38
TraesCS5D01G489700.1	Wheat	cytosol	86.57	87.38
OQU88745	Sorghum	cytosol	89.81	85.84
HORVU1Hr1G072070.1	Barley	cytosol	85.65	82.22
TraesCS3D01G350000.3	Wheat	cytosol	87.96	79.83
HORVU5Hr1G112790.2	Barley	cytosol, extracellular	80.56	67.18
HORVU3Hr1G086830.7	Barley	cytosol	75.0	61.13
Solyc08g078070.2.1	Tomato	nucleus	56.94	60.59
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	56.94	60.59
Solyc01g090170.2.1	Tomato	unclear	56.02	59.61
Solyc05g052070.2.1	Tomato	unclear	55.09	58.62
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	53.24	56.93
Solyc02g093530.2.1	Tomato	plastid	42.13	43.13
Solyc12g011130.1.1	Tomato	cytosol	41.67	42.65
Solyc10g007700.2.1	Tomato	plastid	41.67	42.65
Solyc07g056150.2.1	Tomato	cytosol, nucleus	39.81	40.57
Solyc06g060210.1.1	Tomato	cytosol	37.04	39.41

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009306
GO:GO:0009987	GO:GO:0016787	GO:GO:0017157	UniProt:K4BPJ1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF829	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc04g011360.2	EnsemblPlants:Solyc04g011360.2.1	TIGRFAMs:TIGR00231	UniParc:UPI0002765E22	SEG:seg	:

Description

No Description!

Coordinates

chr4:-:3839267..3844110

Molecular Weight (calculated)

23898.3 Da

IEP (calculated)

8.021

GRAVY (calculated)

-0.378

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TSKGQALADE YGIKFFETSA KTNLNVEEVF FSIGKDIKQR LSESDSKTEP QSIRINQSDQ
201: AGTAGQGAQK SSCCGS

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.