Factsheet for Solyc02g093530.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
cytosol 4
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 1
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 20363867
plastid: 22908117
nucleus: 28394025
endoplasmic reticulum: 29145071

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 20363867 doi

C Barsan, P Sanchez-Bel, C Rombaldi, I Egea, M Rossignol, M Kuntz, M Zouine, A Latché, M Bouzayen, JC Pech

Université de Toulouse, INP-ENSA Toulouse, Génomique et Biotechnologie des Fruits, Avenue de l'Agrobiopole BP 32607, F-31326 Castanet-Tolosan, France.

msms PMID: 29145071 doi

P Ibort, H Imai, M Uemura, R Aroca

Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: pablo.ibort@eez.csic.es., Departamento de Microbiología del Suelo y Sistemas Simbióticos, Estación Experimental del Zaidín (EEZ-CSIC), Profesor Albareda 1, 18008 Granada, Spain. Electronic address: raroca@eez.csic.es., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: u0414004@iwate-u.ac.jp., United Graduate School of Agricultural Sciences, Iwate University, Morioka, Iwate 020-8550, Japan; Cryobiofrontier Research Center, Faculty of Agriculture, Iwate University, 3-18-8 Ueda, Morioka, Iwate 020-8550, Japan. Electronic address: uemura@iwate-u.ac.jp.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc09g008350.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35860.1	Solyc09g008350.2.1	AT2G36840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400032908	Potato	cytosol	99.53	99.53
VIT_14s0066g00180.t01	Wine grape	cytosol	92.42	93.3
KRG93957	Soybean	endoplasmic reticulum	91.94	91.94
Bra011645.1-P	Field mustard	cytosol	91.0	91.0
KRH58242	Soybean	endoplasmic reticulum	91.0	91.0
CDX75535	Canola	cytosol	91.0	91.0
CDX69177	Canola	cytosol	91.0	91.0
AT4G35860.1	Thale cress	cytosol	90.05	90.05
CDY47039	Canola	plasma membrane	89.57	89.57
Bra017733.1-P	Field mustard	cytosol	89.57	89.57
CDX72559	Canola	cytosol	89.1	89.1
Solyc10g007700.2.1	Tomato	plastid	86.73	86.73
Solyc12g011130.1.1	Tomato	cytosol	86.26	86.26
Solyc07g056150.2.1	Tomato	cytosol, nucleus	81.99	81.6
Solyc06g060210.1.1	Tomato	cytosol	55.92	58.13
Solyc01g090170.2.1	Tomato	unclear	48.82	50.74
Solyc05g052070.2.1	Tomato	unclear	48.82	50.74
Solyc05g053940.2.1	Tomato	nucleus, plastid, unclear	47.39	49.26
Solyc08g078070.2.1	Tomato	nucleus	46.92	48.77
Solyc06g005350.2.1	Tomato	cytosol	32.23	47.22
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	44.55	46.53
Solyc10g086350.1.1	Tomato	cytosol, nucleus	43.6	42.59
Solyc04g011360.2.1	Tomato	plastid	43.13	42.13
Solyc09g010370.2.1	Tomato	extracellular, plastid	43.13	42.13
Solyc11g073050.1.1	Tomato	endoplasmic reticulum	42.65	41.67

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0006810	GO:GO:0008150	GO:GO:0009507	GO:GO:0009536	GO:GO:0009987
GO:GO:0016043	GO:GO:0016787	GO:GO:0030100	UniProt:K4BDE9	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc02g093530.2
EnsemblPlants:Solyc02g093530.2.1	TIGRFAMs:TIGR00231	UniParc:UPI00027686E6	:	:	:

Description

Ras-related protein RABB1b [Source:Projected from Arabidopsis thaliana (AT4G35860) UniProtKB/Swiss-Prot;Acc:Q38922]

Coordinates

chr2:-:54369660..54374256

Molecular Weight (calculated)

23289.7 Da

IEP (calculated)

8.061

GRAVY (calculated)

-0.293

Length

211 amino acids

Sequence
(BLAST)

001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTI DGKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMTIMLVGNK SDLSHRRAVS KEEGEQFAKE NGLLFLEASA RTAQSVEEAF IQTAAKILQK IQEGVFDVSN ESSGIKVGYG RTQGPAGPRD
201: GAVAQRGGCC S

Best Arabidopsis Sequence Match ( AT4G35860.1 )
(BLAST)

001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G

Arabidopsis Description

RABB1BRas-related protein RABB1b [Source:UniProtKB/Swiss-Prot;Acc:Q38922]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.