Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY47039 | Canola | plasma membrane | 97.16 | 97.16 |
| Bra017733.1-P | Field mustard | cytosol | 97.16 | 97.16 |
| CDX75535 | Canola | cytosol | 96.68 | 96.68 |
| CDX72559 | Canola | cytosol | 96.68 | 96.68 |
| CDX69177 | Canola | cytosol | 96.68 | 96.68 |
| Bra011645.1-P | Field mustard | cytosol | 96.68 | 96.68 |
| VIT_14s0066g00180.t01 | Wine grape | cytosol | 91.47 | 92.34 |
| PGSC0003DMT400032908 | Potato | cytosol | 90.52 | 90.52 |
| KRG93957 | Soybean | endoplasmic reticulum | 90.05 | 90.05 |
| Solyc02g093530.2.1 | Tomato | plastid | 90.05 | 90.05 |
| KRH58242 | Soybean | endoplasmic reticulum | 89.1 | 89.1 |
| AT4G17170.1 | Thale cress | cytosol | 87.2 | 87.2 |
| AT4G17160.1 | Thale cress | cytosol | 74.88 | 77.07 |
| AT4G17530.1 | Thale cress | cytosol | 45.97 | 48.02 |
| AT5G47200.1 | Thale cress | cytosol | 45.5 | 47.52 |
| AT1G02130.1 | Thale cress | cytosol | 45.5 | 47.29 |
| AT3G11730.1 | Thale cress | cytosol | 45.5 | 46.83 |
| AT5G59840.1 | Thale cress | cytosol | 44.55 | 43.52 |
| AT3G53610.3 | Thale cress | cytosol | 44.08 | 43.06 |
| AT3G46060.1 | Thale cress | cytosol | 44.08 | 43.06 |
| AT5G03520.1 | Thale cress | cytosol | 42.65 | 41.67 |
| AT3G09900.1 | Thale cress | cytosol | 42.65 | 41.28 |
Protein Annotations
| MapMan:22.8.1.2 | Gene3D:3.40.50.300 | EntrezGene:827428 | EntrezGene:829740 | ProteinID:AEE83857.1 | ProteinID:AEE86581.1 |
| ProteinID:AEE86582.1 | ArrayExpress:AT4G35860 | EnsemblPlantsGene:AT4G35860 | RefSeq:AT4G35860 | TAIR:AT4G35860 | RefSeq:AT4G35860-TAIR-G |
| EnsemblPlants:AT4G35860.1 | TAIR:AT4G35860.1 | Symbol:ATRABB1B | EMBL:AY065262 | EMBL:AY085750 | EMBL:AY117348 |
| Unigene:At.70211 | EMBL:BT002513 | EMBL:BT006251 | ProteinID:CAA21472.1 | ProteinID:CAB45962.1 | ProteinID:CAB80988.1 |
| ProteinID:CAB81495.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005773 | GO:GO:0005886 | GO:GO:0006810 | GO:GO:0006888 | GO:GO:0008150 | GO:GO:0009507 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016043 | GO:GO:0016787 |
| GO:GO:0030100 | RefSeq:NP_001078499.1 | RefSeq:NP_193450.1 | RefSeq:NP_195311.1 | ProteinID:OAP00678.1 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 |
| PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 |
| PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 |
| PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 |
| PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 |
| PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 |
| PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF597 | UniProt:Q38922 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EMBL:U46925 |
| UniParc:UPI000009C5A8 | EMBL:Y09314 | : | : | : | : |
Description
RABB1BRas-related protein RABB1b [Source:UniProtKB/Swiss-Prot;Acc:Q38922]
Coordinates
chr4:-:16986840..16989047
Molecular Weight (calculated)
23176.5 Da
IEP (calculated)
7.029
GRAVY (calculated)
-0.254
Length
211 amino acids
Sequence
(BLAST)
(BLAST)
001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.