Factsheet for Bra011645.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
extracellular 1
endoplasmic reticulum 2
vacuole 1
plasma membrane 2
golgi 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, plasma membrane
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra017221.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G35860.1	Bra017221.1-P	AT2G36840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75535	Canola	cytosol	100.0	100.0
CDX69177	Canola	cytosol	100.0	100.0
Bra017733.1-P	Field mustard	cytosol	97.63	97.63
AT4G35860.1	Thale cress	cytosol	96.68	96.68
VIT_14s0066g00180.t01	Wine grape	cytosol	91.94	92.82
PGSC0003DMT400032908	Potato	cytosol	91.47	91.47
Solyc02g093530.2.1	Tomato	plastid	91.0	91.0
KRG93957	Soybean	endoplasmic reticulum	91.0	91.0
KRH58242	Soybean	endoplasmic reticulum	90.05	90.05
Bra026231.1-P	Field mustard	cytosol	86.73	86.73
Bra021065.1-P	Field mustard	cytosol	84.83	85.24
Bra001418.1-P	Field mustard	cytosol, extracellular	45.97	47.09
Bra022113.1-P	Field mustard	cytosol	45.02	47.03
Bra017497.1-P	Field mustard	cytosol	45.02	47.03
Bra024956.1-P	Field mustard	cytosol	44.55	46.53
Bra012658.1-P	Field mustard	cytosol	44.55	46.53
Bra038676.1-P	Field mustard	vacuole	45.02	46.12
Bra002527.1-P	Field mustard	cytosol	44.08	43.06
Bra019475.1-P	Field mustard	cytosol	43.13	42.13
Bra020282.1-P	Field mustard	cytosol	42.65	41.67
Bra006690.1-P	Field mustard	cytosol	42.65	41.67
Bra005767.1-P	Field mustard	cytosol	42.65	41.47
Bra033830.1-P	Field mustard	cytosol	36.02	39.38
Bra029803.1-P	Field mustard	cytosol	41.71	38.94
Bra040162.1-P	Field mustard	cytosol	44.55	34.31
Bra003149.1-P	Field mustard	cytosol	42.18	33.09
Bra038265.1-P	Field mustard	cytosol	42.18	23.67

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra011645	EnsemblPlants:Bra011645.1	EnsemblPlants:Bra011645.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4D588	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF597	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002546D7D	SEG:seg	:

Description

AT4G35860 (E=1e-107) ATRABB1B, ATGB2, ATRAB2C | ATGB2 (GTP-BINDING 2); GTP binding

Coordinates

chrA01:+:1285204..1286616

Molecular Weight (calculated)

23098.5 Da

IEP (calculated)

7.501

GRAVY (calculated)

-0.247

Length

211 amino acids

Sequence
(BLAST)

001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGEQFAKE HGLLFLEASA RTAQNVEEAF IKTAGKILQN IQDGVFDVSN ESSGIKVGYG RPQGAAGGRD
201: GAIAQGGGCC G

Best Arabidopsis Sequence Match ( AT4G35860.1 )
(BLAST)

001: MSYDYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMVTV DGRPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANP NMSIMLIGNK CDLAHKRAVS KEEGQQFAKE HGLLFLEASA RTAQNVEEAF IETAAKILQN IQDGVFDVSN ESSGIKIGYG RTQGAAGGRD
201: GTISQGGGCC G

Arabidopsis Description

RABB1BRas-related protein RABB1b [Source:UniProtKB/Swiss-Prot;Acc:Q38922]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.