Factsheet for Bra005767.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11256	Canola	cytosol	100.0	100.0
AT5G03520.1	Thale cress	cytosol	97.23	97.69
CDX80871	Canola	cytosol	100.0	97.31
Bra029803.1-P	Field mustard	cytosol	93.55	89.82
Bra002527.1-P	Field mustard	cytosol	85.25	85.65
VIT_08s0007g04750.t01	Wine grape	cytosol	84.79	85.19
Bra019475.1-P	Field mustard	cytosol	84.33	84.72
Bra006690.1-P	Field mustard	cytosol	83.87	84.26
Bra033830.1-P	Field mustard	cytosol	72.81	81.87
Bra020282.1-P	Field mustard	cytosol	81.11	81.48
EER98157	Sorghum	cytosol	78.34	78.7
Bra003149.1-P	Field mustard	cytosol	83.87	67.66
Bra024956.1-P	Field mustard	cytosol	55.3	59.41
Bra022113.1-P	Field mustard	cytosol	54.84	58.91
Bra017497.1-P	Field mustard	cytosol	54.84	58.91
Bra012658.1-P	Field mustard	cytosol	54.84	58.91
Os07t0195100-01	Rice	plasma membrane	73.27	58.24
Bra038676.1-P	Field mustard	vacuole	53.92	56.8
Bra001418.1-P	Field mustard	cytosol, extracellular	53.0	55.83
Bra038265.1-P	Field mustard	cytosol	83.87	48.4
Bra040162.1-P	Field mustard	cytosol	54.38	43.07
Bra011645.1-P	Field mustard	cytosol	41.47	42.65
Bra017733.1-P	Field mustard	cytosol	40.09	41.23
Bra021065.1-P	Field mustard	cytosol	39.63	40.95
Bra026231.1-P	Field mustard	cytosol	39.63	40.76

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra005767	EnsemblPlants:Bra005767.1	EnsemblPlants:Bra005767.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005623	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787	UniProt:M4CNH9	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF646	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253FB2A	SEG:seg	:	:

Description

AT5G03520 (E=5e-097) ATRAB8C, ATRABE1D, ATRAB-E1D, RAB-E1D | ATRAB8C; GTP binding

Coordinates

chrA03:+:495887..497456

Molecular Weight (calculated)

24094.7 Da

IEP (calculated)

8.015

GRAVY (calculated)

-0.282

Length

217 amino acids

Sequence
(BLAST)

001: MAVAPARARS DYDYLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWM KNIEQHASDN VNKILVGNKA DMDESKRAIP TAKGQALADE YGIKFFETSA KTNLNVESVF LSIAKDIKQR LTETDTKAEP QGIKITKQDA
201: ASSSSTTAEK SACCSYV

Best Arabidopsis Sequence Match ( AT5G03520.1 )
(BLAST)

001: MAVAPARARS DYDYLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGI DFKIRTVELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWM KNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVENVF MSIAKDIKQR LTETDTKAEP QGIKITKQDT
201: AASSSTAEKS ACCSYV

Arabidopsis Description

RABE1DRAB8C [Source:UniProtKB/TrEMBL;Acc:A0A178UJN5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.