CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g04750.t01	Wine grape	cytosol	81.02	81.02
EES19652	Sorghum	cytosol	80.09	80.47
EER93195	Sorghum	cytosol	79.63	80.37
AT5G03520.1	Thale cress	cytosol	79.17	79.17
CDY11256	Canola	cytosol	78.7	78.34
Bra005767.1-P	Field mustard	cytosol	78.7	78.34
AT3G09900.1	Thale cress	cytosol	78.7	77.98
OQU88745	Sorghum	cytosol	80.56	76.99
CDY41572	Canola	cytosol	77.31	76.61
CDY54609	Canola	cytosol	77.31	76.61
CDX80871	Canola	cytosol	78.7	76.23
Bra029803.1-P	Field mustard	cytosol	76.85	73.45
Os07t0195100-01	Rice	plasma membrane	87.5	69.23
EES07529	Sorghum	cytosol	56.94	60.59
EES03124	Sorghum	cytosol	55.56	59.11
EES18842	Sorghum	cytosol	53.24	56.1
EES10859	Sorghum	cytosol	50.0	52.17
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	40.28	41.43
EES05332	Sorghum	cytosol	39.35	40.48

Protein Annotations

MapMan:22.8.1.5	Gene3D:3.40.50.300	EntrezGene:8075087	UniProt:C5XCK1	EnsemblPlants:EER98157	ProteinID:EER98157
ProteinID:EER98157.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0006810	GO:GO:0006904	GO:GO:0008150	GO:GO:0009306	GO:GO:0009987
GO:GO:0016787	GO:GO:0017157	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF829	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
EnsemblPlantsGene:SORBI_3002G068900	SUPFAM:SSF52540	unigene:Sbi.20087	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001A83C54	RefSeq:XP_002461636.1	SEG:seg	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:6826034..6830569

Molecular Weight (calculated)

24156.6 Da

IEP (calculated)

8.043

GRAVY (calculated)

-0.358

Length

216 amino acids

Sequence
(BLAST)

001: MAAPPSRSRG DYDHLIKLLL IGDSGVGKSC LLLRFSDDTF TTSFITTIGI DFKVRTVELD GKRVKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKV DMDAKRVVST AQGQKLADEY GIKFFETSAK TNQNVEQVFF TMARDIKQRL TETVAAATEP PTIQISRPDP
201: DQAGTASSRW SSCCNT

Best Arabidopsis Sequence Match ( AT3G46060.1 )
(BLAST)

001: MAAPPARARA DYDYLIKLLL IGDSGVGKSC LLLRFSDGSF TTSFITTIGI DFKIRTIELD GKRIKLQIWD TAGQERFRTI TTAYYRGAMG ILLVYDVTDE
101: SSFNNIRNWI RNIEQHASDN VNKILVGNKA DMDESKRAVP TAKGQALADE YGIKFFETSA KTNLNVEEVF FSIGRDIKQR LSDTDSRAEP ATIKISQTDQ
201: AAGAGQATQK SACCGT

Arabidopsis Description

RABE1CRABE1c [Source:UniProtKB/TrEMBL;Acc:A0A178VAR9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.