CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytoskeleton, cytosol

Predictor Summary:

nucleus 1
cytosol 2
extracellular 2
endoplasmic reticulum 4
vacuole 2
plasma membrane 2
golgi 3
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytoskeleton, cytosol, endoplasmic reticulum
Any Predictor:	cytoskeleton, cytosol, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	cytosol
iPSORT:	secretory
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi
PProwler:	secretory
WoLF PSORT:	cytoskeleton
YLoc:	endoplasmic reticulum

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d025660_P001	Maize	plasma membrane, plastid	98.57	98.57
TraesCS2D01G331300.1	Wheat	golgi, plastid	96.67	96.67
TraesCS2B01G350600.1	Wheat	cytosol	96.67	96.67
TraesCS2A01G331600.1	Wheat	cytosol	96.67	96.67
Os04t0470100-01	Rice	plasma membrane	94.76	94.31
EES05332	Sorghum	cytosol	93.33	93.33
Solyc12g011130.1.1	Tomato	cytosol	91.9	91.47
Solyc10g007700.2.1	Tomato	plastid	91.9	91.47
PGSC0003DMT400020113	Potato	cytosol	91.9	91.47
PGSC0003DMT400079822	Potato	cytosol	91.43	91.0
Bra021065.1-P	Field mustard	cytosol	90.48	90.48
CDY58166	Canola	cytosol	90.48	90.48
CDY50126	Canola	cytosol	90.48	90.48
AT4G17160.1	Thale cress	cytosol	79.05	80.98
GSMUA_Achr10P...	Banana	endoplasmic reticulum, extracellular, vacuole	51.43	77.7
EES03124	Sorghum	cytosol	48.1	49.75
EES07529	Sorghum	cytosol	45.24	46.8
EES18842	Sorghum	cytosol	43.81	44.88
EES10859	Sorghum	cytosol	43.33	43.96
EES19652	Sorghum	cytosol	42.38	41.4
EER93195	Sorghum	cytosol	41.9	41.12
EER98157	Sorghum	cytosol	41.43	40.28
OQU88745	Sorghum	cytosol	41.9	38.94

Protein Annotations

MapMan:22.8.1.2	Gene3D:3.40.50.300	EntrezGene:8058685	UniProt:C5YAB0	EnsemblPlants:EES10970	ProteinID:EES10970
ProteinID:EES10970.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0006810	GO:GO:0008150	GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0030100
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF843
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3006G114800	SUPFAM:SSF52540
unigene:Sbi.18816	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A86EE7	RefSeq:XP_002446642.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr6:+:48273105..48275891

Molecular Weight (calculated)

23106.4 Da

IEP (calculated)

7.497

GRAVY (calculated)

-0.196

Length

210 amino acids

Sequence
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLVGNK CDLSHRRAVS YEEGEQFAKE HGLIFMEASA KTAQNVEEAF VKTAGAIYKK IQDGVFDVSN ESYGIKVGYV VPGQSGGAGS
201: SSSQGGSCCS

Best Arabidopsis Sequence Match ( AT4G17170.1 )
(BLAST)

001: MSYAYLFKYI IIGDTGVGKS CLLLQFTDKR FQPVHDLTIG VEFGARMITI DNKPIKLQIW DTAGQESFRS ITRSYYRGAA GALLVYDITR RETFNHLASW
101: LEDARQHANA NMTIMLIGNK CDLAHRRAVS TEEGEQFAKE HGLIFMEASA KTAQNVEEAF IKTAATIYKK IQDGVFDVSN ESYGIKVGYG GIPGPSGGRD
201: GSTSQGGGCC G

Arabidopsis Description

RABB1CRABB1C [Source:UniProtKB/TrEMBL;Acc:A0A178V4V1]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.