CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 4
vacuole 3
plasma membrane 3
golgi 4
cytosol 3
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	endoplasmic reticulum, golgi, mitochondrion, nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES00126
EES03891
OQU77594
OQU78555

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G11730.1	EES00126	AT3G13710.1	21798944
AT3G11730.1	OQU77594	AT3G13710.1	21798944
AT3G11730.1	EES03891	AT3G54120.1	21798944
AT3G11730.1	OQU78555	AT3G54120.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d035741_P002	Maize	cytosol	96.59	96.59
TraesCS1B01G019100.2	Wheat	golgi	87.32	87.32
TraesCS1A01G015300.1	Wheat	cytosol, extracellular	87.32	87.32
TraesCS1D01G013200.1	Wheat	cytosol, extracellular	86.83	87.25
GSMUA_Achr10P...	Banana	cytosol	81.95	83.17
VIT_12s0035g01150.t01	Wine grape	vacuole	79.51	80.69
KRH26285	Soybean	endoplasmic reticulum	78.54	80.1
KRH06045	Soybean	cytosol	78.54	80.1
PGSC0003DMT400064019	Potato	cytosol, extracellular	77.56	78.71
HORVU1Hr1G001910.9	Barley	endoplasmic reticulum	85.85	78.22
Solyc01g103370.2.1	Tomato	endoplasmic reticulum	77.07	78.22
Bra038676.1-P	Field mustard	vacuole	77.07	76.7
CDY47919	Canola	vacuole	77.07	76.7
EES07529	Sorghum	cytosol	75.12	75.86
EES10859	Sorghum	cytosol	76.1	75.36
EES03124	Sorghum	cytosol	73.17	73.89
CDY56593	Canola	cytosol	74.15	73.79
CDX73855	Canola	cytosol	74.15	73.79
AT3G11730.1	Thale cress	cytosol	73.66	73.66
Bra001418.1-P	Field mustard	cytosol, extracellular	73.66	73.3
GSMUA_Achr6P17450_001	Banana	cytosol	83.41	67.86
EER93195	Sorghum	cytosol	57.07	54.67
EES19652	Sorghum	cytosol	57.07	54.42
EER98157	Sorghum	cytosol	56.1	53.24
OQU88745	Sorghum	cytosol	57.56	52.21
EES10970	Sorghum	cytoskeleton, cytosol, endoplasmic reticulum	44.88	43.81
EES05332	Sorghum	cytosol	43.9	42.86

Protein Annotations

MapMan:22.8.1.4	Gene3D:3.40.50.300	EntrezGene:8065289	UniProt:C5YY07	EnsemblPlants:EES18842	ProteinID:EES18842
ProteinID:EES18842.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF827	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	EnsemblPlantsGene:SORBI_3009G003900	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI0001A8897E	RefSeq:XP_002440412.1	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:363770..367460

Molecular Weight (calculated)

23005.5 Da

IEP (calculated)

5.764

GRAVY (calculated)

-0.161

Length

205 amino acids

Sequence
(BLAST)

001: MASGIEYDYL FKLLLIGDSS VGKSCLLLRF ADDSFVDTYI STIGVDFKIR TVDLDGKTVK LQIWDTAGQE RFRTITSSYY RGAHGIIIVY DVTDMESFNN
101: IKQWLSEIDR YASDNVCKLL VGNKCDLVDS KVVETEKAKA FADSLGIPFI ETSAKESINV EEAFLTMSSE IKKRMATQPT VERRPTVHVH MKGQPIQQKS
201: SCCSS

Best Arabidopsis Sequence Match ( AT4G17530.1 )
(BLAST)

001: MNPEYDYLFK LLLIGDSGVG KSCLLLRFAD DSYLDSYIST IGVDFKIRTV EQDGKTIKLQ IWDTAGQERF RTITSSYYRG AHGIIVTYDV TDLESFNNVK
101: QWLNEIDRYA SENVNKLLVG NKCDLTSQKV VSTETAKAFA DELGIPFLET SAKNATNVEE AFMAMTAAIK TRMASQPAGG SKPPTVQIRG QPVNQQSGCC
201: SS

Arabidopsis Description

RABD2CRAB1C [Source:UniProtKB/TrEMBL;Acc:A0A178USY3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.