Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- nucleus 1
- extracellular 4
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Zm00001d039213_P001 | Maize | golgi, plasma membrane, plastid | 77.83 | 73.5 |
| Os04t0367400-02 | Rice | plasma membrane | 64.71 | 67.14 |
| VIT_08s0007g01720.t01 | Wine grape | plasma membrane | 38.91 | 41.15 |
| PGSC0003DMT400052428 | Potato | cytosol, plasma membrane, vacuole | 38.46 | 40.67 |
| EES03891 | Sorghum | golgi, peroxisome, plasma membrane | 38.46 | 40.09 |
| GSMUA_Achr10P... | Banana | plasma membrane | 41.63 | 40.0 |
| Bra003171.1-P | Field mustard | plasma membrane | 36.65 | 39.9 |
| CDX67589 | Canola | golgi, plasma membrane, vacuole | 36.65 | 39.9 |
| CDY51584 | Canola | plasma membrane | 36.2 | 39.41 |
| Solyc09g013110.2.1 | Tomato | cytosol, plasma membrane, vacuole | 37.1 | 39.23 |
| KRH75801 | Soybean | plasma membrane | 36.2 | 38.28 |
| KRH66004 | Soybean | endoplasmic reticulum, golgi, plasma membrane | 35.75 | 37.8 |
| AT3G54120.1 | Thale cress | cytosol, plasma membrane, vacuole | 33.94 | 36.95 |
| CDX78209 | Canola | golgi, plasma membrane, vacuole | 33.94 | 36.59 |
| Bra007047.1-P | Field mustard | golgi, plasma membrane, vacuole | 33.94 | 36.59 |
| GSMUA_Achr8P02250_001 | Banana | cytosol, mitochondrion, peroxisome, plasma membrane | 40.27 | 36.03 |
| EES11624 | Sorghum | plasma membrane | 32.13 | 35.86 |
| CDX73507 | Canola | cytosol, golgi, plasma membrane | 33.03 | 35.61 |
| GSMUA_Achr6P33560_001 | Banana | plasma membrane | 37.1 | 31.06 |
| EER92307 | Sorghum | peroxisome | 30.32 | 29.39 |
| EES19907 | Sorghum | cytosol, peroxisome, plasma membrane | 27.6 | 26.99 |
| KXG33168 | Sorghum | golgi, peroxisome, plasma membrane | 26.24 | 26.85 |
| OQU84758 | Sorghum | cytosol, peroxisome, plasma membrane | 28.05 | 26.72 |
| KXG33320 | Sorghum | cytosol, nucleus, plasma membrane | 29.41 | 25.19 |
| EES02516 | Sorghum | peroxisome, plastid | 24.43 | 24.77 |
| KXG21632 | Sorghum | nucleus, peroxisome, plasma membrane | 27.6 | 24.6 |
| EES19841 | Sorghum | cytosol, nucleus, plasma membrane | 28.05 | 24.31 |
| EER89811 | Sorghum | peroxisome | 28.05 | 24.22 |
| EER90788 | Sorghum | cytosol, nucleus, plasma membrane | 24.43 | 21.86 |
| KXG31516 | Sorghum | cytosol, nucleus, plasma membrane | 27.6 | 21.48 |
| KXG34376 | Sorghum | plasma membrane | 24.43 | 17.2 |
Protein Annotations
| EnsemblPlants:OQU78555 | EnsemblPlantsGene:SORBI_3009G260000 | GO:GO:0005575 | GO:GO:0016020 | GO:GO:0016021 | InterPro:IPR003388 |
| InterPro:Reticulon | PANTHER:PTHR10994 | PANTHER:PTHR10994:SF65 | PFAM:PF02453 | PFscan:PS50845 | ProteinID:OQU78555 |
| ProteinID:OQU78555.1 | SEG:seg | TMHMM:TMhelix | UniParc:UPI000B4264E9 | UniProt:A0A1Z5R539 | MapMan:13.7.2.1 |
Description
hypothetical protein
Coordinates
chr9:-:59328338..59330173
Molecular Weight (calculated)
24408.2 Da
IEP (calculated)
8.573
GRAVY (calculated)
0.543
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MMDARIATAG VGVGGGAGTC AAGGFVWDVL LWRRGRADVS ACLLAATVSS WLLFYGGLVR GYTLLSLASS VLLLLLTVLF LWAKAARLLN RPQPPVPELR
101: VPQQAVDDAA ALLRSALDAA LDAFRDIALG RDSLLFYRAF LCLWSVSIVG SLTDFPTACY ATGIVAALTI PALYHRHQEC IRTYMSFAYM NLRMYEMVYE
201: RLSMKCFLRI RDWVMELLKD P
101: VPQQAVDDAA ALLRSALDAA LDAFRDIALG RDSLLFYRAF LCLWSVSIVG SLTDFPTACY ATGIVAALTI PALYHRHQEC IRTYMSFAYM NLRMYEMVYE
201: RLSMKCFLRI RDWVMELLKD P
001: MGDSVSSSSR VSVHQSLGAG SVADLLLWRN RTGAVILLIS STGFWFLFER AGYNLLSFVS NVLLLLVAIF FLWAKSATVL NRPLPPVPNM EIPEEFANKA
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
101: ADDLRVWINY VLSIASDITI ARNPIRLLQV SLVLWAISYV GTLINSLTLV YIGVLLSLSF PIVYEKYQDH IDEKVNSTSK FVRNISRKFP LPINKEKKHQ
Arabidopsis Description
Reticulon-like protein [Source:UniProtKB/TrEMBL;Acc:A0A1I9LL94]
SUBAcon: [plasma membrane]
SUBAcon: [plasma membrane]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.