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Soybean
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Soybean
Subcellular Localization
min:
: max

 
Winner_takes_all: plasma membrane

Predictor Summary:
  • plastid 1
  • plasma membrane 4
  • extracellular 1
  • endoplasmic reticulum 1
  • vacuole 2
  • golgi 1
Predictors GFP MS/MS Papers
Winner Takes All:plasma membrane
Any Predictor:plastid, secretory
BaCelLo:plastid
MultiLoc:plasma membrane
Plant-mPloc:plasma membrane
PProwler:secretory
WoLF PSORT:vacuole
YLoc:plasma membrane
PPI

Inferred distinct locusB in Crop

locusBlocations
KRG92955
KRG96730
KRH32567
KRH32570
KRH33832
KRH39309
KRH41254
KRH44347
KRH47274
KRH48364
KRH59988
KRH68153
KRH68446
KRH75546

Inferred from Arabidopsis experimental PPI

Ath locusAlocusBAth locusBPaper
AT3G54120.1 KRH44347 AT1G52220.1 21798944
AT3G54120.1 KRH47274 AT1G52220.1 21798944
AT3G54120.1 KRG92955 AT1G56330.1 21798944
AT3G54120.1 KRG96730 AT1G56330.1 21798944
AT3G54120.1 KRH33832 AT1G56330.1 21798944
AT3G54120.1 KRH68446 AT1G56330.1 21798944
AT3G54120.1 KRH39309 AT2G20130.1 21798944
AT3G54120.1 KRH48364 AT2G20130.1 21798944
AT3G54120.1 KRH68153 AT3G28220.1 21798944
AT3G54120.1 KRH32567 AT3G53180.1 21798944
AT3G54120.1 KRH32570 AT3G53180.1 21798944
AT3G54120.1 KRH75546 AT3G53180.1 21798944
AT3G54120.1 KRH41254 AT4G11220.1 21798944
AT3G54120.1 KRH59988 AT4G11220.1 21798944
AT3G54120.1 KRH41254 AT5G41600.1 21798944
AT3G54120.1 KRH59988 AT5G41600.1 21798944
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
KRH66004 Soybean endoplasmic reticulum, golgi, plasma membrane 92.82 92.82
VIT_08s0007g01720.t01 Wine grape plasma membrane 75.12 75.12
PGSC0003DMT400052428 Potato cytosol, plasma membrane, vacuole 67.94 67.94
Solyc09g013110.2.1 Tomato cytosol, plasma membrane, vacuole 66.99 66.99
CDX67589 Canola golgi, plasma membrane, vacuole 55.02 56.65
Bra003171.1-P Field mustard plasma membrane 54.55 56.16
AT3G54120.1 Thale cress cytosol, plasma membrane, vacuole 54.55 56.16
CDY51584 Canola plasma membrane 54.07 55.66
Bra007047.1-P Field mustard golgi, plasma membrane, vacuole 54.55 55.61
CDX78209 Canola golgi, plasma membrane, vacuole 54.55 55.61
CDX73507 Canola cytosol, golgi, plasma membrane 54.07 55.12
GSMUA_Achr10P... Banana plasma membrane 55.5 50.43
GSMUA_Achr8P02250_001 Banana cytosol, mitochondrion, peroxisome, plasma membrane 53.59 45.34
EES03891 Sorghum golgi, peroxisome, plasma membrane 44.02 43.4
Zm00001d042846_P001 Maize plasma membrane 42.58 42.38
Os04t0367400-02 Rice plasma membrane 43.06 42.25
GSMUA_Achr6P33560_001 Banana plasma membrane 52.63 41.67
KRG91024 Soybean plasma membrane 40.19 41.18
KRH35738 Soybean endoplasmic reticulum 38.76 39.71
Os01t0851300-01 Rice golgi, plasma membrane, vacuole 37.8 38.92
KRG93546 Soybean plasma membrane 35.41 37.19
OQU78555 Sorghum extracellular 38.28 36.2
KRH18469 Soybean plasma membrane 33.01 34.85
Zm00001d039213_P001 Maize golgi, plasma membrane, plastid 35.41 31.62
KRH35899 Soybean plasma membrane 31.1 30.66
KRH59988 Soybean mitochondrion 36.36 29.92
KRH41254 Soybean cytosol, nucleus, plasma membrane 35.89 29.53
KRH14529 Soybean cytosol, peroxisome, plasma membrane 33.49 28.57
KRH00872 Soybean endoplasmic reticulum 34.93 28.19
KRH40357 Soybean endoplasmic reticulum 34.45 28.02
KRH48561 Soybean plasma membrane 29.67 27.93
KRH39144 Soybean plasma membrane 29.67 27.93
KRH73588 Soybean plasma membrane 32.54 27.76
KRH06560 Soybean endoplasmic reticulum 33.97 27.73
KRG99174 Soybean endoplasmic reticulum, plasma membrane 11.48 27.59
KRH45979 Soybean cytosol, nucleus, plasma membrane 31.1 26.75
KRH30696 Soybean plasma membrane 30.14 25.61
KRH76938 Soybean endoplasmic reticulum, plasma membrane 19.62 25.47
KRG99024 Soybean plasma membrane 32.06 25.38
KRH28521 Soybean endoplasmic reticulum 25.36 25.0
KRH35223 Soybean cytosol, nucleus, plasma membrane 29.19 24.4
KRH48008 Soybean cytosol, peroxisome, plasma membrane 34.45 22.93
KRG91601 Soybean mitochondrion 29.67 18.24
Protein Annotations
EntrezGene:100775554MapMan:13.7.2.1EMBL:ACUP02000492EnsemblPlantsGene:GLYMA_01G110500GO:GO:0005575GO:GO:0005622
GO:GO:0005623GO:GO:0005737GO:GO:0005783GO:GO:0005789GO:GO:0016020GO:GO:0016021
UniProt:I1J763InterPro:IPR003388EnsemblPlants:KRH75801ProteinID:KRH75801ProteinID:KRH75801.1PFAM:PF02453
PFscan:PS50845PANTHER:PTHR10994PANTHER:PTHR10994:SF65InterPro:ReticulonTMHMM:TMhelixUniParc:UPI00023373EB
SEG:seg:::::
Description
hypothetical protein
Coordinates
chr1:-:37527959..37530140
Molecular Weight (calculated)
23809.8 Da
IEP (calculated)
9.658
GRAVY (calculated)
0.440
Length
209 amino acids
Sequence
(BLAST)
001: MGSFDRLFNR QRGLHEILGG GQVADLILWR RKNLTVGILL VTLGVWVVFE RSGYTLLSLI SNVLLLLIVI LFLWAKSADI LNRPAPPLPQ LRLSEEMANE
101: AKTFICTRVN DLLSVSQDIA LGKDSRLFLK VAAYLWLISI IGGLTDFLTL AYTSLLLVLT VPAIYERYED YIDMYILKGY RKLCLLHVKI NEGYVSKVHN
201: WILEKKKLS
Best Arabidopsis Sequence Match ( AT3G54120.1 )
(BLAST)
001: MSSSSDKLFN RDRTIHEILG GGIVADVMLW RKKNVSVGIV TVTIASWMVF EAFAYTIFTL ISSVLLLLLS ILFLWSKSAS ILNRPSPPLP EFQISEAMAE
101: EASIWLRIHV NKLLQVSHDI AMARDSELYT KVAVSLFLLS LIGSLMDFQT LCHTSVLVVM TVPAFYERYE DYIVGSIEFI CNKTRELYLR LEIWANPENK
201: KLS
Arabidopsis Description
RTNLB12Reticulon-like protein B12 [Source:UniProtKB/Swiss-Prot;Acc:Q9M392]
SUBAcon: [plasma membrane,vacuole,cytosol]
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.