CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 2
extracellular 4
endoplasmic reticulum 6
vacuole 4
plasma membrane 4
golgi 5

Predictors

GFP

MS/MS

Papers

Winner Takes All:	endoplasmic reticulum
Any Predictor:	nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	endoplasmic reticulum
YLoc:	golgi

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08874
KRH13856
KRH35244
KRH38387
KRH43566
KRH69305

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	KRH69305	AT1G14340.1	21798944
AT3G53180.1	KRH13856	AT2G31955.1	21798944
AT3G53180.1	KRH43566	AT2G31955.1	21798944
AT3G53180.1	KRH08874	AT4G25660.1	21798944
AT3G53180.1	KRH35244	AT4G25660.1	21798944
AT3G53180.1	KRH38387	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH75546	Soybean	plastid	27.61	51.74
GSMUA_AchrUn_...	Banana	cytosol	38.28	51.56
PGSC0003DMT400024814	Potato	cytosol	32.95	47.18
Solyc10g083840.1.1	Tomato	cytosol	16.47	44.1
PGSC0003DMT400048935	Potato	cytosol	26.91	43.12
Solyc01g056430.1.1	Tomato	cytosol	32.02	41.82
Solyc06g011290.1.1	Tomato	cytosol	35.03	38.72
KRH32570	Soybean	cytosol, nucleus	64.04	33.01
VIT_08s0007g04670.t01	Wine grape	cytosol	58.7	30.12
Zm00001d032815_P011	Maize	cytosol	54.52	27.91
EER91525	Sorghum	cytosol	54.29	27.79
Os10t0456500-02	Rice	plasma membrane	54.06	27.57
CDX78151	Canola	cytosol	53.6	27.27
Bra006975.1-P	Field mustard	cytosol	53.6	27.27
TraesCS1A01G143000.1	Wheat	cytosol	52.9	27.11
TraesCS1B01G158600.1	Wheat	cytosol	52.9	27.08
CDX67559	Canola	cytosol	52.2	27.04
AT3G53180.1	Thale cress	cytosol	53.13	26.88
TraesCS1D01G141800.1	Wheat	golgi	52.44	26.84
Bra028548.1-P	Field mustard	cytosol	50.81	26.81
HORVU1Hr1G038060.9	Barley	cytosol	52.44	26.78
CDY13313	Canola	cytosol	50.81	26.77
CDX73575	Canola	cytosol	50.12	26.34
HORVU6Hr1G012290.5	Barley	cytosol	47.56	24.32
TraesCS6D01G065600.1	Wheat	cytosol	44.78	23.68
PGSC0003DMT400072666	Potato	cytosol	46.4	23.61
Solyc10g083850.1.1	Tomato	cytosol	45.48	23.53
Solyc10g083830.1.1	Tomato	extracellular	26.22	18.43
GSMUA_AchrUn_...	Banana	cytosol	9.28	7.74
Zm00001d021367_P001	Maize	cytosol	1.16	2.42
PGSC0003DMT400024816	Potato	cytosol	1.62	2.19
Solyc10g083550.1.1	Tomato	cytosol	1.86	2.01
Solyc06g011330.1.1	Tomato	cytosol	1.16	1.68
PGSC0003DMT400072398	Potato	cytosol	1.16	1.07
Zm00001d033947_P001	Maize	cytosol	0.23	0.89
PGSC0003DMT400048927	Potato	cytosol	0.23	0.65
Zm00001d031055_P001	Maize	cytosol	0.23	0.62
Zm00001d044569_P001	Maize	cytosol	0.23	0.56
Zm00001d047936_P001	Maize	cytosol	0.23	0.56
Solyc01g056450.1.1	Tomato	cytosol	0.23	0.41
PGSC0003DMT400072665	Potato	cytosol	0.23	0.28
PGSC0003DMT400048929	Potato	cytosol, plastid	0.0	0.0

Protein Annotations

EMBL:ACUP02006129	EMBL:AF434718	EnsemblPlants:KRH32567	EnsemblPlantsGene:GLYMA_10G060100	EntrezGene:547629	Gene3D:3.20.20.140
GO:GO:0003674	GO:GO:0003824	GO:GO:0016787	InterPro:Amidohydro-rel	InterPro:Metal_Hydrolase	PANTHER:PTHR20852
PANTHER:PTHR20852:SF65	PFAM:PF04909	ProteinID:KRH32567	ProteinID:KRH32567.1	ProteinID:KRH32568.1	SignalP:SignalP-noTM
SUPFAM:SSF51556	UniParc:UPI00000A5060	UniProt:Q8S4Q4	MapMan:35.2	:	:

Description

hypothetical protein

Coordinates

chr10:-:5577340..5582955

Molecular Weight (calculated)

47875.4 Da

IEP (calculated)

5.947

GRAVY (calculated)

-0.006

Length

431 amino acids

Sequence
(BLAST)

001: MDISLPFTVL LIISILCNLK GLEHSSLVEG EGMDFSELRK AVEEVELVDG HSHNIVALNS TSISGFVQAF TVGAFVDADA IAFAQTSLSF KRSLRDVAEL
101: YGTEVSLQGV EEYRKASGIE SISSTCLKAA KFSAILIDDG IEMDKKHDMQ WHKNFTPFVG RILRTERVAE QILEQGLPNG SSWTIDSFTE AYVSKVKSVA
201: KEIHALKSIA AYYGGLEINL NVTKTDAEES LKEVLTNTTK PIFLLKYKNY KNLVDYLFLQ SLEIALSYDL PMQIHTGFGD RLLDLRKTNP LHLRSVLEDK
301: RYSKCRFVLL HASHPYSKEA SYLASVYSQV YLDFGLAIPK LSVHGMTSAV KDLLNLAPLD KVMFSTDAYT FPETFYLGAK NSREVVFSVL HDACIDGELS
401: IPEAVEAAKD ILARNAIRFY KISSPNNAGP P

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.