Factsheet for Zm00001d047936_P001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d002122_P007
Zm00001d016866_P001
Zm00001d026425_P003
Zm00001d045580_P001

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Zm00001d002122_P007	AT1G14340.1	21798944
AT3G53180.1	Zm00001d026425_P003	AT1G14340.1	21798944
AT3G53180.1	Zm00001d016866_P001	AT2G31955.1	21798944
AT3G53180.1	Zm00001d045580_P001	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d044569_P001	Maize	cytosol	100.0	100.0
Zm00001d031055_P001	Maize	cytosol	86.03	95.65
Zm00001d033947_P001	Maize	cytosol	58.1	92.86
Zm00001d021367_P001	Maize	cytosol	63.69	55.07
PGSC0003DMT400048927	Potato	cytosol	29.61	34.64
PGSC0003DMT400072665	Potato	cytosol	61.45	31.16
Solyc01g056450.1.1	Tomato	cytosol	34.64	25.41
GSMUA_AchrUn_...	Banana	cytosol	66.48	23.02
PGSC0003DMT400024816	Potato	cytosol	36.87	20.62
Zm00001d032815_P011	Maize	cytosol	95.53	20.31
EER91525	Sorghum	cytosol	92.18	19.6
Solyc10g083550.1.1	Tomato	cytosol	43.02	19.3
PGSC0003DMT400072398	Potato	cytosol	49.16	18.76
Solyc06g011330.1.1	Tomato	cytosol	30.17	18.12
Solyc10g083830.1.1	Tomato	extracellular	60.89	17.78
TraesCS1A01G143000.1	Wheat	cytosol	81.56	17.36
TraesCS1D01G141800.1	Wheat	golgi	81.56	17.34
TraesCS1B01G158600.1	Wheat	cytosol	81.01	17.22
HORVU1Hr1G038060.9	Barley	cytosol	79.33	16.82
TraesCS6D01G065600.1	Wheat	cytosol	75.98	16.69
Os10t0456500-02	Rice	plasma membrane	77.65	16.45
HORVU6Hr1G012290.5	Barley	cytosol	73.74	15.66
VIT_08s0007g04670.t01	Wine grape	cytosol	68.72	14.64
CDX73575	Canola	cytosol	62.01	13.54
Bra006975.1-P	Field mustard	cytosol	63.13	13.34
CDX78151	Canola	cytosol	63.13	13.34
Bra028548.1-P	Field mustard	cytosol	60.34	13.22
CDY13313	Canola	cytosol	60.34	13.2
AT3G53180.1	Thale cress	cytosol	62.57	13.15
KRH32570	Soybean	cytosol, nucleus	60.89	13.04
CDX67559	Canola	cytosol	59.78	12.86
PGSC0003DMT400072666	Potato	cytosol	42.46	8.97
Solyc10g083850.1.1	Tomato	cytosol	38.55	8.28
PGSC0003DMT400048929	Potato	cytosol, plastid	6.7	6.98
GSMUA_AchrUn_...	Banana	cytosol	2.23	1.25
KRH32567	Soybean	endoplasmic reticulum	0.56	0.23
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0
Solyc10g083840.1.1	Tomato	cytosol	0.0	0.0
PGSC0003DMT400024814	Potato	cytosol	0.0	0.0
KRH75546	Soybean	plastid	0.0	0.0
PGSC0003DMT400048935	Potato	cytosol	0.0	0.0
Solyc06g011290.1.1	Tomato	cytosol	0.0	0.0
Solyc01g056390.1.1	Tomato	cytosol, nucleus	0.0	0.0
Solyc01g056430.1.1	Tomato	cytosol	0.0	0.0

Protein Annotations

KEGG:00220+6.3.1.2	KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	Gene3D:3.30.590.10	MapMan:35.2
UniProt:A0A1D6NNF8	ProteinID:AQL08103.1	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356	GO:GO:0006807
GO:GO:0008150	GO:GO:0008152	GO:GO:0016874	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	ProteinID:ONM41680.1
PFAM:PF00120	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	SUPFAM:SSF55931	UniParc:UPI000844F75B	EnsemblPlantsGene:Zm00001d047936
EnsemblPlants:Zm00001d047936_P001	EnsemblPlants:Zm00001d047936_T001	:	:	:	:

Description

glutamate-ammonia ligases;catalytics;glutamate-ammonia ligases

Coordinates

chr9:-:145689547..145690575

Molecular Weight (calculated)

19706.6 Da

IEP (calculated)

6.506

GRAVY (calculated)

-0.189

Length

179 amino acids

Sequence
(BLAST)

001: MSLWENDQNV FMGSSKDNFH GMSKTGEQFL AGVYHHLLSI LAFTAPHPNS YDRIQPDTWS GAYLCWGKEN REAPLRTACP PGVPLDLVSN FEIKSFDGCA
101: NPHLGLAAIV AAGIDGLRRH LKLPEPIELN PSDHSSKLKR LPQNLQESVE SLSVDKVLHE LIGDKLVTTA IAIQKVSIL

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.