Factsheet for Solyc06g011330.1.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 5
extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, secretory
BaCelLo:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc01g073730.2.1
Solyc02g082060.1.1
Solyc05g007200.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	Solyc05g007200.2.1	AT1G14340.1	21798944
AT3G53180.1	Solyc01g073730.2.1	AT2G31955.1	21798944
AT3G53180.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083550.1.1	Tomato	cytosol	50.67	37.84
Solyc01g056450.1.1	Tomato	cytosol	30.54	37.3
Zm00001d047936_P001	Maize	cytosol	18.12	30.17
Zm00001d044569_P001	Maize	cytosol	18.12	30.17
GSMUA_AchrUn_...	Banana	cytosol	50.67	29.21
Zm00001d031055_P001	Maize	cytosol	15.77	29.19
Zm00001d021367_P001	Maize	cytosol	19.46	28.02
Solyc10g083830.1.1	Tomato	extracellular	56.04	27.24
Zm00001d033947_P001	Maize	cytosol	9.06	24.11
VIT_08s0007g04670.t01	Wine grape	cytosol	54.7	19.4
KRH32570	Soybean	cytosol, nucleus	54.36	19.38
Bra028548.1-P	Field mustard	cytosol	51.68	18.85
CDY13313	Canola	cytosol	51.01	18.58
CDX73575	Canola	cytosol	50.67	18.41
CDX67559	Canola	cytosol	51.01	18.27
Bra006975.1-P	Field mustard	cytosol	51.34	18.06
CDX78151	Canola	cytosol	51.34	18.06
AT3G53180.1	Thale cress	cytosol	51.01	17.84
TraesCS1A01G143000.1	Wheat	cytosol	47.99	17.0
TraesCS1B01G158600.1	Wheat	cytosol	47.99	16.98
HORVU1Hr1G038060.9	Barley	cytosol	47.99	16.94
TraesCS1D01G141800.1	Wheat	golgi	47.65	16.86
Os10t0456500-02	Rice	plasma membrane	47.65	16.8
HORVU6Hr1G012290.5	Barley	cytosol	46.64	16.49
TraesCS6D01G065600.1	Wheat	cytosol	44.97	16.44
Zm00001d032815_P011	Maize	cytosol	46.31	16.39
Solyc10g083850.1.1	Tomato	cytosol	45.64	16.33
EER91525	Sorghum	cytosol	45.64	16.15
GSMUA_AchrUn_...	Banana	cytosol	2.35	2.19
Solyc10g083840.1.1	Tomato	cytosol	1.01	1.86
Solyc01g056390.1.1	Tomato	cytosol, nucleus	0.67	1.83
KRH32567	Soybean	endoplasmic reticulum	1.68	1.16
Solyc06g011290.1.1	Tomato	cytosol	1.34	1.03
Solyc01g056430.1.1	Tomato	cytosol	1.01	0.91
KRH75546	Soybean	plastid	0.67	0.87
Solyc01g056400.1.1	Tomato	endoplasmic reticulum, extracellular	0.0	0.0

Protein Annotations

EnsemblPlants:Solyc06g011330.1.1	EnsemblPlantsGene:Solyc06g011330.1	Gene3D:3.30.590.10	GO:GO:0003674	GO:GO:0003824	GO:GO:0004356
GO:GO:0006807	GO:GO:0008150	GO:GO:0008152	InterPro:Gln_synth/guanido_kin_cat_dom	InterPro:Gln_synth_cat_dom	KEGG:00220+6.3.1.2
KEGG:00250+6.3.1.2	KEGG:00630+6.3.1.2	KEGG:00910+6.3.1.2	PANTHER:PTHR43785	PANTHER:PTHR43785:SF2	PFAM:PF00120
SMART:SM01230	SUPFAM:SSF55931	UniParc:UPI000276726D	UniProt:K4C460	MapMan:35.2	:

Description

No Description!

Coordinates

chr6:+:6484513..6488474

Molecular Weight (calculated)

33200.2 Da

IEP (calculated)

5.402

GRAVY (calculated)

0.025

Length

298 amino acids

Sequence
(BLAST)

001: MVVECYGVIA CLAKQQEMVL ANMCTKSGEA WDYCPREALR KVSQILKDEF GLVMIAGFEV EFYLLESVIK NDKEEFESSD KWRKCHTTAF DMASPMLEEM
101: LTYLQSLNIS VDYLHKEAGK GQFEIGLEYT DCFGAADRLI YTREVIRTVG RKFGYHPTFL PKYSLDEYGC GSSVHISLSN NGINVFKASD GSSQYGISKI
201: GEAFMSGVLD HLPSVLAFTA PHPTRLEVPI LVDIQLKCVD RVNTNFVCPA FDACANPYMG LASIMTAGID GLRKKLSLPA PVGKLDNYLA VFRLPYLP

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.