CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
nucleus 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08874
KRH13856
KRH35244
KRH38387
KRH43566
KRH69305

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G53180.1	KRH69305	AT1G14340.1	21798944
AT3G53180.1	KRH13856	AT2G31955.1	21798944
AT3G53180.1	KRH43566	AT2G31955.1	21798944
AT3G53180.1	KRH08874	AT4G25660.1	21798944
AT3G53180.1	KRH35244	AT4G25660.1	21798944
AT3G53180.1	KRH38387	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc10g083840.1.1	Tomato	cytosol	23.91	34.16
GSMUA_AchrUn_...	Banana	cytosol	43.48	31.25
KRH32567	Soybean	endoplasmic reticulum	51.74	27.61
PGSC0003DMT400024814	Potato	cytosol	34.35	26.25
Solyc01g056430.1.1	Tomato	cytosol	35.22	24.55
Solyc06g011290.1.1	Tomato	cytosol	37.83	22.31
KRH32570	Soybean	cytosol, nucleus	75.22	20.69
PGSC0003DMT400048935	Potato	cytosol	20.0	17.1
VIT_08s0007g04670.t01	Wine grape	cytosol	56.09	15.36
CDX67559	Canola	cytosol	51.74	14.3
AT3G53180.1	Thale cress	cytosol	52.61	14.2
Bra006975.1-P	Field mustard	cytosol	50.87	13.81
CDX78151	Canola	cytosol	50.87	13.81
CDX73575	Canola	cytosol	46.96	13.17
CDY13313	Canola	cytosol	46.52	13.08
Bra028548.1-P	Field mustard	cytosol	46.09	12.97
Os10t0456500-02	Rice	plasma membrane	46.52	12.66
Zm00001d032815_P011	Maize	cytosol	45.22	12.35
TraesCS1A01G143000.1	Wheat	cytosol	44.78	12.25
TraesCS1B01G158600.1	Wheat	cytosol	44.78	12.23
HORVU1Hr1G038060.9	Barley	cytosol	44.78	12.2
TraesCS1D01G141800.1	Wheat	golgi	44.35	12.11
EER91525	Sorghum	cytosol	44.35	12.11
PGSC0003DMT400072666	Potato	cytosol	42.17	11.45
Solyc10g083850.1.1	Tomato	cytosol	41.3	11.4
HORVU6Hr1G012290.5	Barley	cytosol	40.43	11.03
TraesCS6D01G065600.1	Wheat	cytosol	36.96	10.43
Solyc10g083550.1.1	Tomato	cytosol	1.74	1.0
Solyc10g083830.1.1	Tomato	extracellular	2.61	0.98
Zm00001d021367_P001	Maize	cytosol	0.87	0.97
Solyc06g011330.1.1	Tomato	cytosol	0.87	0.67
PGSC0003DMT400024816	Potato	cytosol	0.43	0.31
Zm00001d031055_P001	Maize	cytosol	0.0	0.0
Zm00001d033947_P001	Maize	cytosol	0.0	0.0
Zm00001d044569_P001	Maize	cytosol	0.0	0.0
Zm00001d047936_P001	Maize	cytosol	0.0	0.0
Solyc01g056450.1.1	Tomato	cytosol	0.0	0.0
PGSC0003DMT400072665	Potato	cytosol	0.0	0.0
PGSC0003DMT400072398	Potato	cytosol	0.0	0.0
PGSC0003DMT400048929	Potato	cytosol, plastid	0.0	0.0
PGSC0003DMT400048927	Potato	cytosol	0.0	0.0
GSMUA_AchrUn_...	Banana	cytosol	0.0	0.0

Protein Annotations

EMBL:ACUP02000376	EnsemblPlants:KRH75546	EnsemblPlantsGene:GLYMA_01G091600	Gene3D:3.20.20.140	PANTHER:PTHR20852	PANTHER:PTHR20852:SF65
ProteinID:KRH75546	ProteinID:KRH75546.1	SEG:seg	UniParc:UPI000296118B	UniProt:K7K2U0	MapMan:35.2

Description

hypothetical protein

Coordinates

chr1:+:27741928..27745099

Molecular Weight (calculated)

25691.5 Da

IEP (calculated)

5.322

GRAVY (calculated)

-0.146

Length

230 amino acids

Sequence
(BLAST)

001: MYNPHLSESP VSGLFPKGST QLSFVLTRAA EGSTSSSRDI SLDSNFACIY AFSKAYGDAV TFSPHIVSLK LYGSEVSLQG VEEHRRVSGM QSIYSTCFKA
101: TRISAILIDD GLELDKKHDI EWHRSFTPLF GRILRIERLA EEILDEDWPD GSSWTVDSFT KAFVSNIPTY CSGLEINTNV TKKDVEEGLR QVLIVGKPVR
201: IANKNLIDYI FLQSLEVAQS YDLPMQIHTG

Best Arabidopsis Sequence Match ( AT3G53180.1 )
(BLAST)

001: MEFSELKEAI EKIELVDAHA HNIVSLDSSF PFIGTFSEAA GDALTFAPHS LSFKRNLREI AQLYGTEVSL EAVEEHRKTS GLDSFTSKCF KEARISALLI
101: DDGLKLDKKH DIEWHRNFVP FVGRVLRIET LAEQILEEEC PGGYFYGSES TEPPVWDLDS FTKTFVERLN SLVPEIVALK TIAAYRSGLD IDTYVSKEVA
201: ENGLVEVLRA GKPVRIGNKG LIDYILTISL EVAVRRDLPL QIHTGFGDKD LDLRLSNPLH LRTLLEDKRF GKCRIVLLHA AYPFSKEASF LSSVYPQVYL
301: DFGLAVPKLS VHGMVSSVKE LLDLASIKKV MFSTDGYASP ETYYLGAKKA REVIFLVLSD ACASGDLSLM EAIDAAKDIF SRNSIGFYKL NIDTDSSSPQ
401: NIISPKLKIK EPDVQEDSSS FVRIIWVDTS GQQRCRAVQA QRFNRSVKKN GVGLTFASMG MTSFTDGPAE ESKLTGVGEI RLVPDLSTKQ TIPWTKQESM
501: VLADMQLKPG EAWGYCPRET LRRVAKVLKD EFDLVMNAGF ENEFYLLKNV VREGKEEYMP FDFGPYCATS SFDAASPIFH DIVPALESLN IEVEQFHAES
601: GKGQFEVSLG HTIASHAADN LVYTREVIRS VARKQGLLAT FVPKYDYCDI GSGSHVHLSL WKNGENVFPA SNNSSSHGIS SVGEEFMAGV LFHLPSILAI
701: IAPLPNSYDR IQPNTWSGAF QCWGKENREA ALRAASPPGT PDGLVTNFEI KSFDGSANPH LGLAVIMAAG IDGLRRHLQL PTPIDINPAD VAATLNRLPE
801: TLSEAVEALD KDKVLHDLLG QKLLVAIKGV RKAEVEYYSK NPDAYKQLIH RY

Arabidopsis Description

Nodulin/glutamine synthase-like protein [Source:UniProtKB/TrEMBL;Acc:F4J9A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.