Subcellular Localization
min:
: max
Winner_takes_all: plastid, cytosol
Predictor Summary:
Predictor Summary:
- plastid 4
- mitochondrion 3
- cytosol 3
- nucleus 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018924 | |
| PGSC0003DMT400065786 | |
| PGSC0003DMT400074537 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G53180.1 | PGSC0003DMT400065786 | AT1G14340.1 | 21798944 |
| AT3G53180.1 | PGSC0003DMT400074537 | AT2G31955.1 | 21798944 |
| AT3G53180.1 | PGSC0003DMT400018924 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072665 | Potato | cytosol | 41.28 | 20.11 |
| GSMUA_AchrUn_... | Banana | cytosol | 47.09 | 15.67 |
| PGSC0003DMT400072398 | Potato | cytosol | 41.86 | 15.35 |
| PGSC0003DMT400024816 | Potato | cytosol | 26.16 | 14.06 |
| PGSC0003DMT400072666 | Potato | cytosol | 49.42 | 10.04 |
| Zm00001d021367_P001 | Maize | cytosol | 11.63 | 9.66 |
| CDX73575 | Canola | cytosol | 41.28 | 8.66 |
| VIT_08s0007g04670.t01 | Wine grape | cytosol | 41.86 | 8.57 |
| KRH32570 | Soybean | cytosol, nucleus | 41.28 | 8.49 |
| Os10t0456500-02 | Rice | plasma membrane | 41.28 | 8.4 |
| CDY13313 | Canola | cytosol | 39.53 | 8.31 |
| Bra006975.1-P | Field mustard | cytosol | 40.7 | 8.26 |
| CDX78151 | Canola | cytosol | 40.7 | 8.26 |
| TraesCS6D01G065600.1 | Wheat | cytosol | 38.95 | 8.22 |
| AT3G53180.1 | Thale cress | cytosol | 40.7 | 8.22 |
| Bra028548.1-P | Field mustard | cytosol | 38.95 | 8.2 |
| CDX67559 | Canola | cytosol | 39.53 | 8.17 |
| HORVU6Hr1G012290.5 | Barley | cytosol | 39.53 | 8.07 |
| TraesCS1D01G141800.1 | Wheat | golgi | 38.95 | 7.96 |
| HORVU1Hr1G038060.9 | Barley | cytosol | 38.95 | 7.94 |
| TraesCS1A01G143000.1 | Wheat | cytosol | 38.37 | 7.85 |
| Zm00001d032815_P011 | Maize | cytosol | 38.37 | 7.84 |
| EER91525 | Sorghum | cytosol | 38.37 | 7.84 |
| TraesCS1B01G158600.1 | Wheat | cytosol | 38.37 | 7.84 |
| Zm00001d031055_P001 | Maize | cytosol | 6.4 | 6.83 |
| Zm00001d044569_P001 | Maize | cytosol | 6.98 | 6.7 |
| Zm00001d047936_P001 | Maize | cytosol | 6.98 | 6.7 |
| Zm00001d033947_P001 | Maize | cytosol | 2.91 | 4.46 |
| PGSC0003DMT400048927 | Potato | cytosol | 3.49 | 3.92 |
| Solyc01g056450.1.1 | Tomato | cytosol | 4.65 | 3.28 |
| Solyc01g056430.1.1 | Tomato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400048935 | Potato | cytosol | 0.0 | 0.0 |
| PGSC0003DMT400024814 | Potato | cytosol | 0.0 | 0.0 |
| KRH75546 | Soybean | plastid | 0.0 | 0.0 |
| KRH32567 | Soybean | endoplasmic reticulum | 0.0 | 0.0 |
| GSMUA_AchrUn_... | Banana | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400048929 | EnsemblPlantsGene:PGSC0003DMG401019012 | Gene3D:3.30.590.10 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0004356 |
| GO:GO:0006807 | GO:GO:0008150 | GO:GO:0008152 | InterPro:Gln_synth/guanido_kin_cat_dom | InterPro:Gln_synth_cat_dom | KEGG:00220+6.3.1.2 |
| KEGG:00250+6.3.1.2 | KEGG:00630+6.3.1.2 | KEGG:00910+6.3.1.2 | PANTHER:PTHR43785 | PANTHER:PTHR43785:SF2 | PFAM:PF00120 |
| PGSC:PGSC0003DMG401019012 | SUPFAM:SSF55931 | UniParc:UPI0002965E47 | UniProt:M1BN21 | MapMan:35.2 | : |
Description
Glutamate-ammonia ligase [Source:PGSC_GENE;Acc:PGSC0003DMG401019012]
Coordinates
chr00:-:4348731..4352161
Molecular Weight (calculated)
19546.5 Da
IEP (calculated)
5.351
GRAVY (calculated)
-0.105
Length
172 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQFSTKVQA KTNLVIRPIT LVSSTEPSNR ARNQEMVLTD MLTESGKAWQ YCPRDVLRRF SKILEDEFGL VMDVGIEVEF YLFKSVLRDG KETWATIDRT
101: CYCSTTAIDV ASLVLQEIVA SLHSFNIVVE QGTKLEVIGD SNSAGRESLG EEDFYIVIGA LRRNRRFRVN IL
101: CYCSTTAIDV ASLVLQEIVA SLHSFNIVVE QGTKLEVIGD SNSAGRESLG EEDFYIVIGA LRRNRRFRVN IL
1: MKMKKLLKVV FLLVAYLTCS IAMASYHGCN RVAEKATRMN VVGEDSRNEF GNYEEKKKKA NLWSGRKLAS GPSRRGCGH
Arabidopsis Description
F28L1.2 protein [Source:UniProtKB/TrEMBL;Acc:Q9M8K9]
SUBAcon: [extracellular]
SUBAcon: [extracellular]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.