Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g082060.1.1 | Tomato | cytosol | 90.09 | 89.67 |
| HORVU1Hr1G049510.1 | Barley | cytosol | 25.94 | 41.04 |
| PGSC0003DMT400026255 | Potato | cytosol | 44.81 | 40.08 |
| TraesCS1B01G205700.1 | Wheat | cytosol, peroxisome, plastid | 45.75 | 40.08 |
| Zm00001d029725_P001 | Maize | extracellular, mitochondrion | 46.23 | 40.0 |
| HORVU1Hr1G049520.3 | Barley | cytosol, peroxisome, plastid | 45.75 | 39.92 |
| Os10t0533900-01 | Rice | cytosol, nucleus, peroxisome | 46.23 | 39.84 |
| CDX89402 | Canola | cytosol | 46.7 | 39.44 |
| Bra013908.1-P | Field mustard | cytosol | 45.28 | 39.18 |
| CDX89404 | Canola | cytosol | 45.28 | 39.18 |
| CDX94429 | Canola | cytosol | 45.28 | 39.18 |
| EER94588 | Sorghum | cytosol | 45.28 | 39.18 |
| Bra013910.1-P | Field mustard | cytosol | 46.23 | 39.04 |
| AT4G25680.1 | Thale cress | cytosol | 46.23 | 38.89 |
| HORVU7Hr1G002080.2 | Barley | cytosol | 35.85 | 38.58 |
| CDX94426 | Canola | cytosol | 45.75 | 38.49 |
| CDY66007 | Canola | cytosol | 45.75 | 38.19 |
| Bra010452.1-P | Field mustard | cytosol | 45.75 | 38.19 |
| AT4G25660.1 | Thale cress | cytosol | 45.75 | 38.04 |
| CDY49480 | Canola | cytosol | 44.34 | 37.15 |
| GSMUA_Achr11P... | Banana | cytosol | 35.38 | 36.76 |
| TraesCS1A01G184300.1 | Wheat | cytosol | 45.75 | 34.64 |
| TraesCS1D01G192400.1 | Wheat | cytosol, peroxisome, plastid | 45.75 | 34.52 |
| Zm00001d045580_P001 | Maize | cytosol | 42.92 | 33.96 |
| EER87703 | Sorghum | cytosol | 42.45 | 33.58 |
| Os06t0107000-01 | Rice | cytosol, nucleus | 42.45 | 33.33 |
| TraesCS7A01G019000.1 | Wheat | cytosol | 45.28 | 32.65 |
| TraesCSU01G065800.1 | Wheat | cytosol | 44.81 | 32.09 |
| TraesCS7D01G016100.1 | Wheat | nucleus | 45.28 | 29.54 |
| PGSC0003DMT400036630 | Potato | cytosol | 22.17 | 21.08 |
| PGSC0003DMT400002750 | Potato | cytosol | 21.23 | 20.09 |
| PGSC0003DMT400067477 | Potato | cytosol | 19.34 | 18.55 |
| PGSC0003DMT400039949 | Potato | mitochondrion | 21.23 | 18.22 |
| PGSC0003DMT400071605 | Potato | mitochondrion | 22.17 | 16.49 |
| PGSC0003DMT400064873 | Potato | nucleus | 18.87 | 16.06 |
| PGSC0003DMT400073331 | Potato | nucleus | 22.17 | 14.87 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400018924 | EnsemblPlantsGene:PGSC0003DMG400007338 | EntrezGene:102588654 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | PANTHER:PTHR12378 |
| PANTHER:PTHR12378:SF9 | PFAM:PF05903 | PGSC:PGSC0003DMG400007338 | RefSeq:XP_006363155.1 | SMART:SM01179 | UniParc:UPI000294F987 |
| UniProt:M1ABD7 | MapMan:19.4.1.7 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400007338]
Coordinates
chr2:-:37720222..37721162
Molecular Weight (calculated)
23852.4 Da
IEP (calculated)
9.677
GRAVY (calculated)
-0.334
Length
212 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEVILHVYD ITKSDGHDAV NFGVVQMNRL LKDTIYFGGI FHTAVQVYDN VEWAYGSCEK GSGVFSCPAT KNPNYTHREK IVLGRTECSA HKVNQILKDL
101: RDAWPGNKYN MVSRNSKHFC DEFLEKLGVP KLPNWANRFA NIGDIAKEAA GTVVKAKDKA SKLVFHPVDF ASNLTTVNKN SKAIYSPSEF RFRFDFAVKN
201: FKVAAPVIRS DR
101: RDAWPGNKYN MVSRNSKHFC DEFLEKLGVP KLPNWANRFA NIGDIAKEAA GTVVKAKDKA SKLVFHPVDF ASNLTTVNKN SKAIYSPSEF RFRFDFAVKN
201: FKVAAPVIRS DR
001: MAEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
Arabidopsis Description
At4g25660 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.