Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- plasma membrane 1
- plastid 1
- extracellular 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc03g008010.2.1 | Tomato | cytosol | 98.31 | 98.31 |
| VIT_16s0050g01050.t01 | Wine grape | cytosol | 78.06 | 76.13 |
| Solyc03g034310.1.1 | Tomato | cytosol | 27.0 | 74.42 |
| KRH08874 | Soybean | cytosol | 75.95 | 73.47 |
| KRH38387 | Soybean | cytosol | 75.11 | 71.77 |
| PGSC0003DMT400018924 | Potato | cytosol | 40.08 | 44.81 |
| PGSC0003DMT400036630 | Potato | cytosol | 24.47 | 26.01 |
| PGSC0003DMT400067477 | Potato | cytosol | 24.05 | 25.79 |
| PGSC0003DMT400002750 | Potato | cytosol | 21.94 | 23.21 |
| PGSC0003DMT400039949 | Potato | mitochondrion | 24.05 | 23.08 |
| PGSC0003DMT400064873 | Potato | nucleus | 21.94 | 20.88 |
| PGSC0003DMT400071605 | Potato | mitochondrion | 22.36 | 18.6 |
| PGSC0003DMT400073331 | Potato | nucleus | 24.47 | 18.35 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400026255 | EnsemblPlantsGene:PGSC0003DMG400010126 | EntrezGene:102590123 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom | PANTHER:PTHR12378 |
| PANTHER:PTHR12378:SF9 | PFAM:PF05903 | PGSC:PGSC0003DMG400010126 | RefSeq:XP_006353912.1 | SMART:SM01179 | UniParc:UPI000296C521 |
| UniProt:M1AMX3 | MapMan:19.4.1.7 | : | : | : | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400010126]
Coordinates
chr3:+:43901260..43907959
Molecular Weight (calculated)
26131.5 Da
IEP (calculated)
6.856
GRAVY (calculated)
-0.422
Length
237 amino acids
Sequence
(BLAST)
(BLAST)
001: MTEVVLHIYD VTNSGSDKTN NTIVQINKFF KDGIGLGGIF HSAVQVYGDD EWSFGFCEQG TGVFSCPAGK NPMYSYRECI VLGNTNHSIF KVNEILRELS
101: REWPGHSYDL LSKNCNHFCD EFCERLGVQK LPGWVNRFAH AGDAAVEIAG TTAFRLRQAK TEIVTASKVA YRFFAGVASN NSASPDCPGN SGRGTPRFQA
201: NWFKNFITTG AKPSGSDSEE VLGQQQQHGT ETPLRQN
101: REWPGHSYDL LSKNCNHFCD EFCERLGVQK LPGWVNRFAH AGDAAVEIAG TTAFRLRQAK TEIVTASKVA YRFFAGVASN NSASPDCPGN SGRGTPRFQA
201: NWFKNFITTG AKPSGSDSEE VLGQQQQHGT ETPLRQN
001: MAEVVLHIYD VTNSGSEKTN NTIVQINRFF KDGIGLGGIF HSAIQVYGND EWSYGYCEQG TGVFSCPSGK NPMYTYREKI VLGKTDCTIF MVNQILRELS
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
101: REWPGHTYDL LSKNCNHFCD VLCDRLGVPK IPGWVNRFAH AGDTALEVAG NTAMRVKQAK TELVSASKVA YRFLSNVTSN ITNGSNGSSG SPQRPGTLNN
201: SDNGSFRLQG SWLKGILNTA KPSTSTEIGN KEEDTNHTIT NQKKQNRDSD VLLFQ
Arabidopsis Description
At4g25660 [Source:UniProtKB/TrEMBL;Acc:Q9SZZ4]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.