Factsheet for PGSC0003DMT400036630

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 3
golgi 2
mitochondrion 3
cytosol 3
plastid 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus, plasma membrane, plastid
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g117100.2.1	Tomato	cytosol	99.55	98.67
VIT_09s0002g08960.t01	Wine grape	plasma membrane	71.3	69.43
KRH47381	Soybean	cytosol	67.71	68.95
KRH44526	Soybean	mitochondrion	65.02	66.82
CDY39951	Canola	cytosol	64.57	63.16
Bra035161.1-P	Field mustard	cytosol	64.13	62.72
CDX87334	Canola	cytosol	64.13	61.64
CDX79359	Canola	cytosol	62.78	61.4
AT1G80690.2	Thale cress	cytosol	63.23	61.04
Bra003580.1-P	Field mustard	cytosol	62.33	60.96
CDX67961	Canola	cytosol	62.33	60.96
PGSC0003DMT400073331	Potato	nucleus	71.3	50.32
GSMUA_Achr3P04560_001	Banana	mitochondrion	49.78	48.9
GSMUA_Achr4P01900_001	Banana	mitochondrion	48.88	48.23
PGSC0003DMT400067477	Potato	cytosol	41.7	42.08
PGSC0003DMT400039949	Potato	mitochondrion	42.6	38.46
GSMUA_Achr11P...	Banana	mitochondrion	53.81	37.85
PGSC0003DMT400064873	Potato	nucleus	40.81	36.55
Os06t0182100-00	Rice	plastid	42.6	36.26
Zm00001d045118_P001	Maize	plastid	39.01	35.95
HORVU7Hr1G029950.1	Barley	plastid	39.46	35.77
PGSC0003DMT400002750	Potato	cytosol	35.87	35.71
TraesCS7D01G147600.1	Wheat	plastid	40.36	35.16
KXG19474	Sorghum	plastid	41.26	35.11
TraesCS7A01G146100.1	Wheat	plastid	39.91	35.04
TraesCS7B01G048600.1	Wheat	plastid	39.46	33.98
PGSC0003DMT400071605	Potato	mitochondrion	41.26	32.28
PGSC0003DMT400026255	Potato	cytosol	26.01	24.47
PGSC0003DMT400018924	Potato	cytosol	21.08	22.17

Protein Annotations

EnsemblPlants:PGSC0003DMT400036630	EnsemblPlantsGene:PGSC0003DMG400014125	EntrezGene:102601212	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	MEROPS:C97.A04
PANTHER:PTHR12378	PANTHER:PTHR12378:SF17	PFAM:PF05903	PGSC:PGSC0003DMG400014125	RefSeq:XP_006341367.1	SEG:seg
SMART:SM01179	UniParc:UPI000296339A	UniProt:M1B3Y2	MapMan:19.4.1.7	:	:

Description

Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400014125]

Coordinates

chr3:+:56901818..56903706

Molecular Weight (calculated)

24445.1 Da

IEP (calculated)

9.098

GRAVY (calculated)

-0.340

Length

223 amino acids

Sequence
(BLAST)

001: MLCRKNSVSC GRGSVPVYLN VYDLTSINGY AYWLGLGVYH SGVQVHGIEY AFGAHEYSTT GIFEGEPKQC EGFTFRKAIL IGWTEMSHGE VKRVMEEFAE
101: KYRGNAYNLI TKNCNHFCND ACVKLSGNPI PSWVNRLARI GLFCNCIIPV SLNSTKIGHH RIEDKAGEGE KKKLRSRSSR LTPSSDSSSP SSSCSPPLVT
201: TSSNRSRGKS PVPSSSPLIA NSI

Best Arabidopsis Sequence Match ( AT1G80690.1 )
(BLAST)

001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV

Arabidopsis Description

F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.