Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- extracellular 1
- endoplasmic reticulum 1
- vacuole 1
- plasma membrane 1
- golgi 1
- cytosol 3
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY39951 | Canola | cytosol | 89.61 | 90.79 |
| Bra035161.1-P | Field mustard | cytosol | 89.18 | 90.35 |
| CDX87334 | Canola | cytosol | 90.48 | 90.09 |
| Bra003580.1-P | Field mustard | cytosol | 86.58 | 87.72 |
| CDX67961 | Canola | cytosol | 86.58 | 87.72 |
| CDX79359 | Canola | cytosol | 85.71 | 86.84 |
| KRH44526 | Soybean | mitochondrion | 65.37 | 69.59 |
| VIT_09s0002g08960.t01 | Wine grape | plasma membrane | 67.1 | 67.69 |
| KRH47381 | Soybean | cytosol | 63.64 | 67.12 |
| PGSC0003DMT400036630 | Potato | cytosol | 61.04 | 63.23 |
| Solyc03g117100.2.1 | Tomato | cytosol | 61.04 | 62.67 |
| AT5G25170.1 | Thale cress | cytosol, mitochondrion | 56.28 | 59.63 |
| GSMUA_Achr4P01900_001 | Banana | mitochondrion | 51.08 | 52.21 |
| GSMUA_Achr3P04560_001 | Banana | mitochondrion | 50.22 | 51.1 |
| Solyc06g068380.2.1 | Tomato | cytosol | 57.58 | 50.38 |
| AT2G25190.1 | Thale cress | nucleus, vacuole | 51.95 | 50.0 |
| PGSC0003DMT400073331 | Potato | nucleus | 58.01 | 42.41 |
| GSMUA_Achr11P... | Banana | mitochondrion | 55.41 | 40.38 |
| AT4G17486.1 | Thale cress | cytosol | 36.8 | 37.95 |
| KXG19474 | Sorghum | plastid | 42.86 | 37.79 |
| AT1G47740.3 | Thale cress | nucleus | 45.45 | 37.63 |
| HORVU7Hr1G029950.1 | Barley | plastid | 39.83 | 37.4 |
| Zm00001d045118_P001 | Maize | plastid | 38.96 | 37.19 |
| AT5G47310.1 | Thale cress | cytosol | 38.1 | 35.92 |
| TraesCS7D01G147600.1 | Wheat | plastid | 39.39 | 35.55 |
| Os06t0182100-00 | Rice | plastid | 40.26 | 35.5 |
| TraesCS7A01G146100.1 | Wheat | plastid | 38.96 | 35.43 |
| TraesCS7B01G048600.1 | Wheat | plastid | 39.39 | 35.14 |
| AT4G25680.1 | Thale cress | cytosol | 26.84 | 24.6 |
| AT4G25660.1 | Thale cress | cytosol | 26.84 | 24.31 |
Protein Annotations
| ArrayExpress:AT1G80690 | EnsemblPlants:AT1G80690.2 | EnsemblPlantsGene:AT1G80690 | EntrezGene:844408 | Gene3D:3.90.1720.30 | InterPro:PPPDE_dom |
| MEROPS:C97.A04 | PANTHER:PTHR12378 | PANTHER:PTHR12378:SF17 | PFAM:PF05903 | ProteinID:AAF14657.1 | ProteinID:ANM58234.1 |
| RefSeq:AT1G80690 | RefSeq:AT1G80690-TAIR-G | RefSeq:NP_001320684.1 | SEG:seg | SMART:SM01179 | TAIR:AT1G80690 |
| UniParc:UPI00000A877B | UniProt:Q9SAI9 | MapMan:19.4.1.7 | : | : | : |
Description
F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
Coordinates
chr1:-:30329039..30330944
Molecular Weight (calculated)
25485.3 Da
IEP (calculated)
9.379
GRAVY (calculated)
-0.451
Length
231 amino acids
Sequence
(BLAST)
(BLAST)
001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GKFSGFMCNC VLPATINATR FGNNRVNQDK SCEAENEKKK LTSVSSRERS TIATPSSSSS
201: SPSVQVRGRS RKRRPRALQP SSPLTLGSSS V
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GKFSGFMCNC VLPATINATR FGNNRVNQDK SCEAENEKKK LTSVSSRERS TIATPSSSSS
201: SPSVQVRGRS RKRRPRALQP SSPLTLGSSS V
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.