Factsheet for Solyc06g068380.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 2
endoplasmic reticulum 2
vacuole 2
plasma membrane 2
golgi 2
mitochondrion 3
cytosol 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	secretory
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	nucleus
Predotar:	secretory
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073331	Potato	nucleus	93.56	78.16
Solyc03g117100.2.1	Tomato	cytosol	60.61	71.11
KRH44526	Soybean	mitochondrion	53.03	64.52
KRH47381	Soybean	cytosol	53.41	64.38
VIT_09s0002g08960.t01	Wine grape	plasma membrane	54.55	62.88
Bra003580.1-P	Field mustard	cytosol	50.0	57.89
CDX67961	Canola	cytosol	50.0	57.89
AT1G80690.2	Thale cress	cytosol	50.38	57.58
CDX79359	Canola	cytosol	49.62	57.46
CDY39951	Canola	cytosol	49.62	57.46
Bra035161.1-P	Field mustard	cytosol	48.86	56.58
CDX87334	Canola	cytosol	48.86	55.6
GSMUA_Achr4P01900_001	Banana	mitochondrion	42.42	49.56
GSMUA_Achr3P04560_001	Banana	mitochondrion	40.91	47.58
Solyc08g078220.2.1	Tomato	cytosol	34.85	41.63
Solyc12g089060.1.1	Tomato	mitochondrion	37.12	39.68
HORVU7Hr1G029950.1	Barley	plastid	35.98	38.62
Os06t0182100-00	Rice	plastid	37.88	38.17
KXG19474	Sorghum	plastid	37.5	37.79
Solyc12g006880.1.1	Tomato	cytosol	31.82	37.5
Solyc04g080030.2.1	Tomato	mitochondrion	34.47	37.45
TraesCS7D01G147600.1	Wheat	plastid	35.98	37.11
TraesCS7A01G146100.1	Wheat	plastid	35.61	37.01
GSMUA_Achr11P...	Banana	mitochondrion	43.56	36.28
Solyc01g109430.2.1	Tomato	cytosol, mitochondrion, nucleus	34.09	36.14
TraesCS7B01G048600.1	Wheat	plastid	35.23	35.91
Zm00001d045118_P001	Maize	plastid	32.58	35.54
Solyc03g034310.1.1	Tomato	cytosol	8.33	25.58
Solyc03g008010.2.1	Tomato	cytosol	22.73	25.32
Solyc02g082060.1.1	Tomato	cytosol	18.56	23.0

Protein Annotations

EnsemblPlants:Solyc06g068380.2.1	EnsemblPlantsGene:Solyc06g068380.2	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	MEROPS:C97.A04	PANTHER:PTHR12378
PANTHER:PTHR12378:SF17	PFAM:PF05903	SEG:seg	SMART:SM01179	UniParc:UPI000276639C	UniProt:K4C813
MapMan:19.4.1.7	:	:	:	:	:

Description

No Description!

Coordinates

chr6:-:42363022..42364804

Molecular Weight (calculated)

28867.1 Da

IEP (calculated)

9.988

GRAVY (calculated)

-0.747

Length

264 amino acids

Sequence
(BLAST)

001: MLCCKNSVKN GRGSVPVYLN VYDLTPMNGY AYWIGLGVYH SGVQVHGVEY AFGAHEYPST GIFEGEPKKC EGFIFRKTIL IGWTEKTPRE VRRVMEELAD
101: KYKGNAYNLI TKNCNHFCSD ACVKLTNNPI PRWVNRLARI GFVCHCIVPM SLKSTKVRHH RMEDKASEGT SKKPQSSLNN QTPSSNPSGE GDKKKPQSSS
201: NKPTTSSNPS NNKKPQSSSD KPAPSSNPSS ASSQPPPIAK STTSNKTKSL LPPSTPLTSD SNAS

Best Arabidopsis Sequence Match ( AT1G80690.1 )
(BLAST)

001: MLCRKNSSLV DRGNVPVYLN VYDLTPINGY AYWLGLGVYH SGVEVHGIEY AYGAHEYPST GIFEGEPKQC EGFTFRKSIL IGKTDLGPLE VRATMEQLAD
101: NYKGSSYNLI TKNCNHFCDE TCIKLTGNPI PSWVNRLARI GFMCNCVLPA TINATRFGNN RVNQDKSCEA ENEKKKLTSV SSRERSTIAT PSSSSSSPSV
201: QVRGRSRKRR PRALQPSSPL TLGSSSV

Arabidopsis Description

F23A5.4 protein [Source:UniProtKB/TrEMBL;Acc:Q9SAI9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.