CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d045118_P001	Maize	plastid	72.52	78.51
Os06t0182100-00	Rice	plastid	72.9	72.9
HORVU7Hr1G029950.1	Barley	plastid	68.32	72.76
TraesCS7D01G147600.1	Wheat	plastid	68.32	69.92
TraesCS7B01G048600.1	Wheat	plastid	68.7	69.5
TraesCS7A01G146100.1	Wheat	plastid	66.79	68.9
KRH44526	Soybean	mitochondrion	38.55	46.54
KRH47381	Soybean	cytosol	37.4	44.75
GSMUA_Achr4P01900_001	Banana	mitochondrion	38.17	44.25
VIT_09s0002g08960.t01	Wine grape	plasma membrane	38.17	43.67
AT1G80690.2	Thale cress	cytosol	37.79	42.86
GSMUA_Achr3P04560_001	Banana	mitochondrion	37.02	42.73
Solyc03g117100.2.1	Tomato	cytosol	35.88	41.78
PGSC0003DMT400036630	Potato	cytosol	35.11	41.26
CDY39951	Canola	cytosol	35.5	40.79
Bra003580.1-P	Field mustard	cytosol	35.5	40.79
CDX67961	Canola	cytosol	35.5	40.79
CDX79359	Canola	cytosol	35.11	40.35
Bra035161.1-P	Field mustard	cytosol	35.11	40.35
CDX87334	Canola	cytosol	35.11	39.66
EES11216	Sorghum	cytosol	30.53	38.46
EES07522	Sorghum	cytosol	30.53	38.28
Solyc06g068380.2.1	Tomato	cytosol	37.79	37.5
KXG39054	Sorghum	plastid	34.73	36.69
EER89945	Sorghum	cytosol	28.24	35.07
EER95329	Sorghum	mitochondrion	33.21	34.52
GSMUA_Achr11P...	Banana	mitochondrion	40.46	33.44
EER95706	Sorghum	mitochondrion	29.01	32.48
PGSC0003DMT400073331	Potato	nucleus	37.4	31.01
EER94588	Sorghum	cytosol	25.19	26.94
EER87703	Sorghum	cytosol	22.14	21.64

Protein Annotations

EnsemblPlants:KXG19474	EnsemblPlantsGene:SORBI_3010G064100	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF17
PFAM:PF05903	ProteinID:KXG19474	ProteinID:KXG19474.1	SEG:seg	SMART:SM01179	UniParc:UPI0007F22534
UniProt:A0A194YHM6	MapMan:19.4.1.7	:	:	:	:

Description

hypothetical protein

Coordinates

chr10:-:5069989..5073348

Molecular Weight (calculated)

27351.2 Da

IEP (calculated)

11.381

GRAVY (calculated)

-0.287

Length

262 amino acids

Sequence
(BLAST)

001: MGSSAGSTPT VRATRQQQLQ QRGAGAGAGE APSSSSPVFL NVYDVTPANG YARWLGLGVY HSGVQVHGVE YAYGAHDGAS SGIFEVVPRR CPGYTFRESV
101: LVGTTELSRA EVRALMSDLA ADFPGDAYNL VSRNCNHFCD AACRRLVAGR ARIPRWVNRL AKIGVVFTCV IPGNGRAVVR GRAPSTASAT GKGSGGVRSR
201: SARQQEASSA SASAPPRPRT FFRSLSVGGR RKNLTMPRPL SASPPPPPLA DASTSTSSGS TT

Best Arabidopsis Sequence Match ( AT2G25190.1 )
(BLAST)

001: MLCFKGSVKR KKQSGSVPVY LNVYDLTPMN AYGYWLGLGV FHSGVEVHGV EYAFGAHESS STGIFEVEPK KCPGFTFRKS ILVGKTDLVA KEVRVFMEKL
101: AEEYQGNKYH LITRNCNHFC NEVCLKLAQK SIPRWVNRLA RLGVLCNCVL PPRLNEAKVR RVGKGELSES EKKKLRNRSR SDPLLSSSPS SSTPDNHRSH
201: IRAKSSGNHP SSSSSSSSGS KKNRRPKAQD QKSPSVSIKT

Arabidopsis Description

Expressed protein [Source:UniProtKB/TrEMBL;Acc:O81728]
SUBAcon: [vacuole,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.