CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 2
mitochondrion 1
cytosol 3
plastid 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	mitochondrion
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus, plastid
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EER87703
EER97813
EES00126
EES05123
OQU77594

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	EES05123	AT1G27300.1	21798944
AT4G17486.1	EER97813	AT2G39760.1	21798944
AT4G17486.1	EER87703	AT4G25660.1	21798944
AT4G17486.1	EER87703	AT4G25680.1	21798944
AT5G47310.1	EES00126	AT1G55190.1	21798944
AT5G47310.1	OQU77594	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d017468_P001	Maize	cytosol	94.26	94.26
Os02t0655500-01	Rice	cytosol	83.25	85.29
TraesCS6D01G225900.1	Wheat	cytosol	79.9	81.46
TraesCS6B01G280600.1	Wheat	cytosol	78.95	80.49
TraesCS6A01G243700.2	Wheat	cytosol	77.99	79.9
EES11216	Sorghum	cytosol	71.29	71.63
GSMUA_Achr4P30040_001	Banana	mitochondrion	64.11	59.82
GSMUA_AchrUn_...	Banana	cytosol	59.33	57.67
KRH04183	Soybean	cytosol	58.85	55.16
KRH77327	Soybean	cytosol	58.37	54.46
KRH28159	Soybean	cytosol	58.37	54.46
KRH57475	Soybean	cytosol	57.89	54.26
EER89945	Sorghum	cytosol	51.67	51.18
Solyc08g078220.2.1	Tomato	cytosol	54.07	51.13
PGSC0003DMT400067477	Potato	cytosol	54.07	51.13
CDX90471	Canola	cytosol	51.67	50.47
CDY09624	Canola	cytosol	51.67	50.23
Bra012661.1-P	Field mustard	cytosol	51.2	50.0
EER95706	Sorghum	mitochondrion	55.5	49.57
CDY64684	Canola	cytosol	57.42	49.38
CDX77757	Canola	cytosol	57.42	49.38
Bra024951.1-P	Field mustard	cytosol	57.42	49.38
AT4G17486.1	Thale cress	cytosol	52.63	49.11
AT5G47310.1	Thale cress	cytosol	56.94	48.57
CDY27921	Canola	cytosol	51.2	48.2
CDX76571	Canola	cytosol	51.2	47.35
GSMUA_Achr1P00440_001	Banana	mitochondrion	61.24	46.72
EER95329	Sorghum	mitochondrion	45.93	38.1
KXG39054	Sorghum	plastid	44.5	37.5
GSMUA_Achr5P12520_001	Banana	plastid	60.77	34.79
KXG19474	Sorghum	plastid	38.28	30.53
EER94588	Sorghum	cytosol	23.92	20.41
EER87703	Sorghum	cytosol	22.49	17.54

Protein Annotations

EnsemblPlants:EES07522	EnsemblPlantsGene:SORBI_3004G296700	EntrezGene:8073965	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF14	PFAM:PF05903	ProteinID:EES07522	ProteinID:EES07522.1	RefSeq:XP_002454546.1	SMART:SM01179
unigene:Sbi.3162	UniParc:UPI0001A86071	UniProt:C5XRZ7	MapMan:19.4.1.7	:	:

Description

hypothetical protein

Coordinates

chr4:-:63629892..63632423

Molecular Weight (calculated)

23137.0 Da

IEP (calculated)

5.036

GRAVY (calculated)

-0.293

Length

209 amino acids

Sequence
(BLAST)

001: MGARNSAAAT PVLLNVYDLT AANDYLYWLG FGVFHSGIEV HGTEYGFGAH DYPSSGVFEV ESKSCPGFIY RRTVWLGTTD MSHEEFRSFI EKLAGDYHGN
101: TYHLINKNCN HFTDDVCQNL TGKPIPSWVN RLARVGSVFD CLLPESVQVS PVGRVPTRRQ ISDDDLCSIH SPIIGESDND EDEAKHLLPA PSNDLHSVDV
201: PPKLAKDLL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.