Factsheet for GSMUA_Achr4P30040_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
mitochondrion 6
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr10P...
GSMUA_Achr7P09070_001
GSMUA_Achr7P10650_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	GSMUA_Achr10P...	AT2G39760.1	21798944
AT4G17486.1	GSMUA_Achr7P10650_001	AT2G39760.1	21798944
AT4G17486.1	GSMUA_AchrUn_...	AT4G25660.1	21798944
AT4G17486.1	GSMUA_AchrUn_...	AT4G25680.1	21798944
AT5G47310.1	GSMUA_Achr7P09070_001	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol	78.57	81.86
EES11216	Sorghum	cytosol	62.5	67.31
PGSC0003DMT400067477	Potato	cytosol	64.29	65.16
Zm00001d002758_P002	Maize	cytosol	60.71	65.07
Zm00001d026190_P001	Maize	cytosol	60.27	64.9
Solyc08g078220.2.1	Tomato	cytosol	63.84	64.71
GSMUA_Achr1P00440_001	Banana	mitochondrion	78.57	64.23
Os02t0655500-01	Rice	cytosol	58.48	64.22
EES07522	Sorghum	cytosol	59.82	64.11
TraesCS6A01G243700.2	Wheat	cytosol	58.04	63.73
TraesCS6D01G225900.1	Wheat	cytosol	58.04	63.41
Zm00001d017468_P001	Maize	cytosol	58.93	63.16
TraesCS6B01G280600.1	Wheat	cytosol	57.59	62.93
KRH28159	Soybean	cytosol	62.5	62.5
KRH77327	Soybean	cytosol	61.61	61.61
Os04t0548000-01	Rice	cytosol	56.7	61.35
CDX90471	Canola	cytosol	58.04	60.75
KRH04183	Soybean	cytosol	59.82	60.09
Bra012661.1-P	Field mustard	cytosol	57.14	59.81
TraesCS2A01G416700.1	Wheat	cytosol	55.8	59.81
CDY09624	Canola	cytosol	57.14	59.53
TraesCS2B01G435700.2	Wheat	cytosol	54.91	59.13
CDX77757	Canola	cytosol	63.84	58.85
KRH57475	Soybean	cytosol	58.48	58.74
TraesCS2D01G413700.1	Wheat	cytosol	55.8	58.69
AT4G17486.1	Thale cress	cytosol	58.48	58.48
Bra024951.1-P	Field mustard	cytosol	63.39	58.44
CDY64684	Canola	cytosol	63.39	58.44
EER95706	Sorghum	mitochondrion	60.71	58.12
CDY27921	Canola	cytosol	57.14	57.66
Os03t0100900-01	Rice	plastid	62.95	57.55
CDX76571	Canola	cytosol	58.04	57.52
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	58.93	56.9
AT5G47310.1	Thale cress	cytosol	62.05	56.73
TraesCS4B01G376300.2	Wheat	vacuole	59.38	56.12
GSMUA_Achr5P06500_001	Banana	cytosol, extracellular, peroxisome	53.57	55.81
GSMUA_Achr2P19400_001	Banana	plastid	52.68	54.38
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	58.04	54.17
HORVU2Hr1G098080.1	Barley	peroxisome	54.91	47.13
GSMUA_Achr7P25980_001	Banana	mitochondrion	43.75	47.12
Zm00001d027266_P001	Maize	mitochondrion, plastid	60.71	45.79
GSMUA_Achr5P12520_001	Banana	plastid	74.55	45.75
GSMUA_Achr4P14060_001	Banana	cytosol, plastid, vacuole	33.04	44.85
GSMUA_Achr4P07180_001	Banana	cytosol, nucleus, peroxisome	44.64	43.48
GSMUA_Achr4P01900_001	Banana	mitochondrion	41.96	41.59
GSMUA_Achr3P04560_001	Banana	mitochondrion	41.07	40.53
GSMUA_Achr1P22650_001	Banana	mitochondrion, nucleus, plasma membrane	44.2	38.37
GSMUA_Achr11P...	Banana	mitochondrion	41.96	29.65
GSMUA_Achr11P...	Banana	cytosol	26.79	24.29
GSMUA_Achr11P...	Banana	cytosol	21.88	24.02
GSMUA_AchrUn_...	Banana	cytosol	26.34	23.79
GSMUA_Achr8P12230_001	Banana	cytosol	25.89	23.58

Protein Annotations

EnsemblPlants:GSMUA_Achr4P30040_001	EnsemblPlants:GSMUA_Achr4T30040_001	EnsemblPlantsGene:GSMUA_Achr4G30040_001	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378
PANTHER:PTHR12378:SF35	PFAM:PF05903	SMART:SM01179	UniParc:UPI000296F160	UniProt:M0STB6	MapMan:19.4.1.7

Description

UPF0326 protein At4g17486 [Source:GMGC_GENE;Acc:GSMUA_Achr4G30040_001]

Coordinates

chr4:-:27804384..27806859

Molecular Weight (calculated)

24960.2 Da

IEP (calculated)

5.746

GRAVY (calculated)

-0.332

Length

224 amino acids

Sequence
(BLAST)

001: MRSILSRCSS VKGLSGRNGD GSGRTHLYLN VYDLTPVNNY LYWFGIGVFH SGIEVHGMEY GFGAHDYSSS GVFEVEPKSC PGFIFRRSVW LGTTDMSRSE
101: FRVFIEDLAG KYHGDTYHLI IKNCNHFTDE VCMRLTGKPI PGWVNRLARL GSFCNCILPE NIQVTAVGQV PANPAYSEDG SDSYASSLID ESDEEDADHH
201: LLKKPNGDFV HSNDVPLRIG RDDI

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.