Factsheet for TraesCS6A01G243700.2

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS2A01G255800.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G266900.1
TraesCS2D01G345400.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25680.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25680.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25680.1	21798944
AT5G47310.1	TraesCS1A01G124100.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1B01G143000.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1D01G130300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3A01G104300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3B01G122600.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3D01G106500.1	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G280600.1	Wheat	cytosol	98.04	97.56
TraesCS6D01G225900.1	Wheat	cytosol	97.55	97.07
Os02t0655500-01	Rice	cytosol	82.35	82.35
EES07522	Sorghum	cytosol	79.9	77.99
Zm00001d017468_P001	Maize	cytosol	78.43	76.56
TraesCS2A01G416700.1	Wheat	cytosol	65.2	63.64
GSMUA_Achr4P30040_001	Banana	mitochondrion	63.73	58.04
GSMUA_AchrUn_...	Banana	cytosol	59.31	56.28
KRH04183	Soybean	cytosol	57.84	52.91
KRH57475	Soybean	cytosol	57.35	52.47
KRH77327	Soybean	cytosol	57.35	52.23
Solyc08g078220.2.1	Tomato	cytosol	56.37	52.04
PGSC0003DMT400067477	Potato	cytosol	56.37	52.04
KRH28159	Soybean	cytosol	56.86	51.79
CDX90471	Canola	cytosol	53.43	50.93
CDY09624	Canola	cytosol	53.43	50.7
Bra012661.1-P	Field mustard	cytosol	52.94	50.47
AT5G47310.1	Thale cress	cytosol	59.8	49.8
CDX77757	Canola	cytosol	59.31	49.79
CDY64684	Canola	cytosol	58.82	49.38
Bra024951.1-P	Field mustard	cytosol	58.82	49.38
TraesCS7A01G357600.1	Wheat	cytosol	49.02	48.54
AT4G17486.1	Thale cress	cytosol	51.96	47.32
CDY27921	Canola	cytosol	51.47	47.3
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	52.94	46.55
CDX76571	Canola	cytosol	50.49	45.58
GSMUA_Achr1P00440_001	Banana	mitochondrion	60.78	45.26
TraesCS4A01G040500.1	Wheat	mitochondrion	46.57	38.31
GSMUA_Achr5P12520_001	Banana	plastid	61.27	34.25
TraesCS7A01G146100.1	Wheat	plastid	38.24	30.71
TraesCS1A01G184300.1	Wheat	cytosol	25.49	18.57
TraesCS7A01G019000.1	Wheat	cytosol	25.0	17.35

Protein Annotations

EnsemblPlants:TraesCS6A01G243700.2	EnsemblPlantsGene:TraesCS6A01G243700	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF14
PFAM:PF05903	SEG:seg	SMART:SM01179	MapMan:19.4.1.7	:	:

Description

No Description!

Coordinates

chr6A:+:455043197..455045717

Molecular Weight (calculated)

22421.3 Da

IEP (calculated)

4.500

GRAVY (calculated)

-0.209

Length

204 amino acids

Sequence
(BLAST)

001: MEAGNDGPST PVLLNVYDLT PVNDYLYWLG FGVFHSGIEV HGMEYGFGAH DFSSSGVFEV ESKCCPGFVY RKTVSLGTTD MSREDFRSFI ERLAGKYHGN
101: TYNLIAKNCN HFTDDVCRSL TGKPIPGWVN RLARVGSVFD CLLPESVQVS PVGRVPTLRP VIDDDLDSVS SSDSDEGDDK HLLEAPSTDL QPVEVPLKLA
201: KDLL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.