Factsheet for TraesCS4A01G040500.1

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
mitochondrion 5
nucleus 1
plasma membrane 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G261500.1	Wheat	mitochondrion	98.79	98.79
TraesCS4B01G261700.1	Wheat	mitochondrion	97.58	97.58
Os03t0198500-01	Rice	mitochondrion	89.92	90.28
Zm00001d028130_P001	Maize	mitochondrion	89.92	89.2
EER95329	Sorghum	mitochondrion	89.92	88.49
Zm00001d048173_P001	Maize	mitochondrion	88.31	86.56
HORVU4Hr1G070620.3	Barley	cytosol, nucleus, plastid	98.39	73.94
VIT_18s0001g12090.t01	Wine grape	mitochondrion	70.97	71.26
KRH05795	Soybean	mitochondrion	69.76	68.92
KRH15239	Soybean	mitochondrion	69.76	68.92
GSMUA_Achr7P25980_001	Banana	mitochondrion	56.05	66.83
GSMUA_Achr4P07180_001	Banana	cytosol, nucleus, peroxisome	60.89	65.65
PGSC0003DMT400039949	Potato	mitochondrion	64.52	64.78
Solyc12g089060.1.1	Tomato	mitochondrion	64.11	64.37
KRH38144	Soybean	mitochondrion	55.65	64.19
KRH49521	Soybean	mitochondrion	64.92	64.14
KRG89196	Soybean	mitochondrion	64.52	63.74
Solyc04g080030.2.1	Tomato	mitochondrion	62.1	63.37
GSMUA_Achr1P22650_001	Banana	mitochondrion, nucleus, plasma membrane	64.52	62.02
PGSC0003DMT400064873	Potato	nucleus	61.69	61.45
GSMUA_Achr4P14060_001	Banana	cytosol, plastid, vacuole	40.73	61.21
CDY10616	Canola	cytosol, nucleus, peroxisome	61.69	60.96
Solyc01g109430.2.1	Tomato	cytosol, mitochondrion, nucleus	60.89	60.64
PGSC0003DMT400071605	Potato	mitochondrion	64.92	56.49
AT1G47740.3	Thale cress	nucleus	63.31	56.27
CDY17002	Canola	nucleus	63.71	56.23
CDY17812	Canola	nucleus	63.31	55.87
Bra014091.1-P	Field mustard	nucleus	63.31	55.87
CDY25677	Canola	nucleus	59.68	55.02
Bra032229.1-P	Field mustard	nucleus	61.69	54.84
CDY23657	Canola	nucleus	61.69	54.64
TraesCS7A01G357600.1	Wheat	cytosol	39.11	47.09
TraesCS6A01G243700.2	Wheat	cytosol	38.31	46.57
VIT_03s0063g02130.t01	Wine grape	mitochondrion	62.1	45.97
TraesCS2A01G416700.1	Wheat	cytosol	37.5	44.5
TraesCS5A01G543200.2	Wheat	cytosol, peroxisome, vacuole	37.1	39.66
TraesCS7A01G146100.1	Wheat	plastid	34.27	33.46
TraesCS7A01G019000.1	Wheat	cytosol	26.61	22.45
TraesCS1A01G184300.1	Wheat	cytosol	23.39	20.71

Protein Annotations

EnsemblPlants:TraesCS4A01G040500.1	EnsemblPlantsGene:TraesCS4A01G040500	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF11
PFAM:PF05903	SEG:seg	SMART:SM01179	MapMan:19.4.1.7	:	:

Description

No Description!

Coordinates

chr4A:+:34022192..34024625

Molecular Weight (calculated)

27980.8 Da

IEP (calculated)

10.020

GRAVY (calculated)

-0.378

Length

248 amino acids

Sequence
(BLAST)

001: MKLRTKRPGW KSLVPLQLSR KSTMRFFLFP KVQASGQSPN DTPVYLNVYD LTPMNGYIYW AGLGIFHSGI EVHGVEYAFG AHDYPTSGVF EVEPRQCPGF
101: RFRRSIFLGT TCLDPIQVRQ FMELQSVNYN GDSYHLIMKN CNHFCKDMCY KLTGSKIPKW VNRLARIGAI CNCLLPESLK ISPVGHDPNS QPEDSEKRRL
201: RNPLSCFSSI SSQRALPPSS SPFPPSPVKE PILSSSLRKS STASLKSR

Best Arabidopsis Sequence Match ( AT1G47740.3 )
(BLAST)

001: MLNGKEEPKQ KKGWSESLLE FRSGFGEKMK VVSKKRWKSL GPLHLKSKSV ARFCFFSKLK SNNHGPGRAP VYLNVYDLTP INGYIYWAGL GIFHSGVEVH
101: GVEYAFGAHD YATSGVFEVE PRQCPGFKFK KSIFIGTTNL NPTQVREFME DMACSYYGNM YHLIVKNCNH FCQDVCYKLT GKKIPKWVNR LAQIGSVCSC
201: ILPESLKITA VCHDPDGQIP EEENEKRSLR SSFSCLSSIS MRQKQLSTSS LFLQSPLRGC LPPWQLKRSK SNSSSLKER

Arabidopsis Description

PPPDE putative thiol peptidase family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXP3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.