Factsheet for TraesCS5A01G543200.2

Subcellular Localization

min:

: max

Winner_takes_all: peroxisome, vacuole, cytosol

Predictor Summary:

plastid 1
peroxisome 1
mitochondrion 1
cytosol 1
vacuole 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, peroxisome, vacuole
Any Predictor:	cytosol, peroxisome, vacuole
iPSORT:	plastid
MultiLoc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	vacuole

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G124100.1
TraesCS1B01G143000.1
TraesCS1D01G130300.1
TraesCS2A01G255800.1
TraesCS2A01G346700.1
TraesCS2B01G365000.1
TraesCS2D01G266900.1
TraesCS2D01G345400.1
TraesCS3A01G104300.1
TraesCS3B01G122600.1
TraesCS3D01G106500.1
TraesCS7A01G019000.1
TraesCS7D01G016100.1
TraesCSU01G065800.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17486.1	TraesCS2A01G346700.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2B01G365000.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2D01G345400.1	AT1G27300.1	21798944
AT4G17486.1	TraesCS2A01G255800.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS2D01G266900.1	AT2G39760.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25660.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25660.1	21798944
AT4G17486.1	TraesCS7A01G019000.1	AT4G25680.1	21798944
AT4G17486.1	TraesCS7D01G016100.1	AT4G25680.1	21798944
AT4G17486.1	TraesCSU01G065800.1	AT4G25680.1	21798944
AT5G47310.1	TraesCS1A01G124100.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1B01G143000.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS1D01G130300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3A01G104300.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3B01G122600.1	AT1G55190.1	21798944
AT5G47310.1	TraesCS3D01G106500.1	AT1G55190.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4B01G376300.2	Wheat	vacuole	93.53	91.56
HORVU0Hr1G009550.1	Barley	cytosol, peroxisome, plasma membrane	90.52	87.5
EER95706	Sorghum	mitochondrion	71.55	70.94
Os03t0100900-01	Rice	plastid	73.71	69.8
GSMUA_Achr4P30040_001	Banana	mitochondrion	56.9	58.93
GSMUA_AchrUn_...	Banana	cytosol	53.88	58.14
KRH28159	Soybean	cytosol	54.31	56.25
Zm00001d027266_P001	Maize	mitochondrion, plastid	71.98	56.23
KRH04183	Soybean	cytosol	52.59	54.71
TraesCS2A01G416700.1	Wheat	cytosol	49.14	54.55
KRH77327	Soybean	cytosol	52.59	54.46
KRH57475	Soybean	cytosol	51.72	53.81
PGSC0003DMT400067477	Potato	cytosol	50.86	53.39
TraesCS6A01G243700.2	Wheat	cytosol	46.55	52.94
Solyc08g078220.2.1	Tomato	cytosol	50.43	52.94
CDX90471	Canola	cytosol	48.71	52.8
CDY09624	Canola	cytosol	48.71	52.56
Bra012661.1-P	Field mustard	cytosol	48.28	52.34
CDY27921	Canola	cytosol	49.14	51.35
AT5G47310.1	Thale cress	cytosol	53.45	50.61
GSMUA_Achr1P00440_001	Banana	mitochondrion	59.48	50.37
Bra024951.1-P	Field mustard	cytosol	52.59	50.21
CDX77757	Canola	cytosol	52.59	50.21
CDY64684	Canola	cytosol	52.59	50.21
AT4G17486.1	Thale cress	cytosol	48.28	50.0
CDX76571	Canola	cytosol	48.28	49.56
TraesCS7A01G357600.1	Wheat	cytosol	43.1	48.54
TraesCS4A01G040500.1	Wheat	mitochondrion	39.66	37.1
GSMUA_Achr5P12520_001	Banana	plastid	58.19	36.99
TraesCS7A01G146100.1	Wheat	plastid	35.78	32.68
TraesCS1A01G184300.1	Wheat	cytosol	26.29	21.79
TraesCS7A01G019000.1	Wheat	cytosol	23.28	18.37

Protein Annotations

EnsemblPlants:TraesCS5A01G543200.2	EnsemblPlantsGene:TraesCS5A01G543200	Gene3D:3.90.1720.30	InterPro:PPPDE_dom	PANTHER:PTHR12378	PANTHER:PTHR12378:SF35
PFAM:PF05903	SEG:seg	SMART:SM01179	MapMan:19.4.1.7	:	:

Description

No Description!

Coordinates

chr5A:-:699467776..699470352

Molecular Weight (calculated)

25588.2 Da

IEP (calculated)

4.899

GRAVY (calculated)

-0.246

Length

232 amino acids

Sequence
(BLAST)

001: MRMRVLPAFT FSTAPPPPPS DPPPSAAPAP PPPATYAVYL NIYDISPINN YLYWFGLGIF HSAVQVHGME FGYGAHEYAT SGVFQVEPKS CPGFIFRRSV
101: CMGTTNMSRA EVRAFLEDLA EDYHGDTYHL IVKNCNHFTA DVCKRLTGKP TPGWVNRLAR LGSVCNCVLP ENIKVSAVRD ETAHLEFSDD DLESDTSIID
201: SDIGDLDHLL TTPNSDVVPP KDKTLTPERD SL

Best Arabidopsis Sequence Match ( AT5G47310.1 )
(BLAST)

001: MRVLGLSSSL CSGEDKEEEE INGEGSLTPV YLNVYDLTPV NNYLYWFGLG IFHSGIEAHG FEYGYGAHEY SSSGVFEVEP RSCPGFIFRR SVLLGTTSMS
101: RSDFRSFMEK LSRKYHGDTY HLIAKNCNHF TEEVCLQVTG KPIPGWINRM ARVGSFCNCI LPESIQLSSV NHPEALEFSD DNDGSEESVA SSVSYETDGE
201: GSDHHLITAP NSDIAYLQDR PVRLARELLQ EPTDDTSPQY LLKRS

Arabidopsis Description

At5g47310 [Source:UniProtKB/TrEMBL;Acc:Q9LVS8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.